Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.34762 * 2 1 4 4 C 1.53995 * 110.30709 * 237.86128 * 2 1 3 5 5 N 1.47903 * 107.05650 * 242.30324 * 4 2 1 6 6 C 1.46905 * 111.00227 * 214.15818 * 5 4 2 7 7 C 1.50696 * 109.46970 * 175.78824 * 6 5 4 8 8 H 1.07992 * 120.00180 * 355.14178 * 7 6 5 9 9 C 1.37883 * 119.99529 * 175.13997 * 7 6 5 10 10 N 1.31508 * 119.99956 * 0.28011 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46529 * 60.00515 * 11 9 7 13 13 H 1.48493 * 109.47003 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47146 * 300.00623 * 11 9 7 15 15 C 1.48534 * 105.82055 * 334.67393 * 5 4 2 16 16 C 1.54590 * 110.31062 * 122.14272 * 2 1 3 17 17 H 1.08997 * 110.72966 * 22.34235 * 16 2 1 18 18 C 1.53004 * 110.72513 * 259.22862 * 16 2 1 19 19 N 1.46904 * 109.47159 * 175.00035 * 18 16 2 20 20 H 1.09003 * 109.46793 * 180.68764 * 1 2 3 21 21 H 1.09000 * 109.47188 * 300.68049 * 1 2 3 22 22 H 1.08999 * 109.47751 * 60.68770 * 1 2 3 23 23 H 1.09005 * 109.91663 * 122.95620 * 4 2 1 24 24 H 1.08996 * 110.08345 * 1.75188 * 4 2 1 25 25 H 1.08993 * 109.46812 * 55.78609 * 6 5 4 26 26 H 1.09001 * 109.46417 * 295.79069 * 6 5 4 27 27 H 0.97006 * 120.00284 * 359.71674 * 10 9 7 28 28 H 1.08999 * 110.66736 * 157.64363 * 15 5 4 29 29 H 1.09009 * 110.66329 * 280.76821 * 15 5 4 30 30 H 1.08991 * 109.47577 * 295.00404 * 18 16 2 31 31 H 1.09004 * 109.46602 * 55.00567 * 18 16 2 32 32 H 1.00898 * 110.99960 * 56.04743 * 19 18 16 33 33 H 1.00896 * 110.99920 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0644 -0.7683 -1.2229 5 7 2.8313 -1.9235 -0.7083 6 6 3.9752 -2.2261 -1.5790 7 6 4.7895 -3.3384 -0.9701 8 1 4.5335 -3.7232 0.0059 9 6 5.8615 -3.8647 -1.6593 10 7 6.1766 -3.3924 -2.8454 11 14 6.8714 -5.2430 -0.9043 12 1 5.9966 -6.4161 -0.6512 13 1 7.9592 -5.6286 -1.8386 14 1 7.4612 -4.7797 0.3773 15 6 3.2855 -1.5347 0.6514 16 6 2.0666 -0.7713 1.2276 17 1 1.3162 -1.4661 1.6049 18 6 2.5053 0.1982 2.3269 19 7 2.8969 -0.5611 3.5219 20 1 -0.3633 -1.0276 0.0123 21 1 -0.3633 0.5244 0.8838 22 1 -0.3634 0.5031 -0.8960 23 1 2.7162 -0.1225 -1.8114 24 1 1.2347 -1.1174 -1.8375 25 1 4.5965 -1.3368 -1.6847 26 1 3.6135 -2.5353 -2.5596 27 1 5.6524 -2.6764 -3.2374 28 1 3.5048 -2.4182 1.2510 29 1 4.1564 -0.8816 0.5940 30 1 3.3534 0.7859 1.9758 31 1 1.6791 0.8647 2.5745 32 1 3.6179 -1.2324 3.3036 33 1 3.1906 0.0573 4.2631 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708863457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -14.753859 kcal Electronic energy + Delta-G solvation = -13077.673409 eV Core-core repulsion = 10944.258327 eV Total energy + Delta-G solvation = -2133.415082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.89231 -34.79422 -33.40137 -31.81844 -28.96397 -26.83551 -25.10374 -23.73854 -21.63286 -20.14511 -19.54255 -16.86165 -15.74539 -15.32715 -14.62959 -14.25525 -13.70265 -13.52315 -13.20555 -12.95663 -12.61162 -12.24837 -11.99530 -11.49048 -11.12532 -10.94862 -10.68863 -10.43840 -10.35187 -10.14484 -10.07175 -9.99550 -8.64478 -8.59463 -8.39915 -7.40761 -6.37875 -4.06539 3.43641 3.46679 3.64946 4.51744 4.58260 4.84694 5.01209 5.06895 5.25945 5.40565 5.49819 5.53125 5.69433 5.85741 5.93234 5.96230 6.02551 6.20202 6.31761 6.33860 6.50454 6.62964 6.71112 6.95769 7.10843 7.19602 7.48912 7.67605 7.99201 8.29747 8.56080 8.86077 9.64624 11.01680 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039794 B = 0.009509 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.459159 B = 2943.967045 C = 3473.024898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.066 0.934 4 C 0.036 3.964 5 N -0.509 5.509 6 C 0.174 3.826 7 C -0.591 4.591 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.914 5.914 11 Si 1.072 2.928 12 H -0.286 1.286 13 H -0.283 1.283 14 H -0.288 1.288 15 C 0.060 3.940 16 C -0.092 4.092 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.851 5.851 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.069 0.931 25 H -0.022 1.022 26 H 0.023 0.977 27 H 0.266 0.734 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 7.339 8.172 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.085 0.915 4 C -0.092 4.092 5 N -0.233 5.233 6 C 0.048 3.952 7 C -0.629 4.629 8 H 0.075 0.925 9 C -0.190 4.190 10 N -0.550 5.550 11 Si 0.900 3.100 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.215 1.215 15 C -0.068 4.068 16 C -0.111 4.111 17 H 0.106 0.894 18 C -0.059 4.059 19 N -0.381 5.381 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.087 0.913 25 H -0.004 1.004 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.985 5.610 7.894 11.941 hybrid contribution 0.190 2.240 -0.074 2.249 sum -6.795 7.850 7.819 12.998 Atomic orbital electron populations 1.21791 0.94763 1.02015 1.00842 1.21982 0.95955 0.98593 0.95136 0.91544 1.22936 0.98071 0.92250 0.95979 1.64754 1.23560 1.32592 1.02388 1.19994 0.86846 0.95406 0.92989 1.21986 1.14762 1.20328 1.05832 0.92526 1.25871 0.96732 1.01036 0.95343 1.70793 1.41002 1.27191 1.16019 0.83493 0.76000 0.75322 0.75152 1.21286 1.20800 1.21507 1.23007 0.94116 0.98090 0.91626 1.22291 0.98750 0.96816 0.93285 0.89421 1.21791 0.98787 0.95074 0.90203 1.58734 1.48603 1.21010 1.09737 0.92181 0.93093 0.93045 0.94962 0.91263 1.00446 0.95914 0.92329 0.90382 0.94937 0.95814 0.91473 0.84189 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.89 37.16 0.33 -1.41 16 2 C -0.10 -1.47 3.17 -89.27 -0.28 -1.76 16 3 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 4 C 0.04 0.68 6.36 -2.75 -0.02 0.66 16 5 N -0.51 -11.55 5.34 -231.89 -1.24 -12.79 16 6 C 0.17 4.67 3.95 -4.97 -0.02 4.65 16 7 C -0.59 -17.10 8.68 -34.44 -0.30 -17.40 16 8 H 0.06 1.63 6.72 -52.49 -0.35 1.27 16 9 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 10 N -0.91 -28.29 13.65 55.43 0.76 -27.54 16 11 Si 1.07 25.60 29.90 -169.99 -5.08 20.52 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.06 1.20 4.56 -1.90 -0.01 1.19 16 16 C -0.09 -1.46 2.82 -88.76 -0.25 -1.71 16 17 H 0.09 1.46 7.86 -51.93 -0.41 1.05 16 18 C 0.07 0.97 6.15 -3.82 -0.02 0.95 16 19 N -0.85 -10.78 9.62 -10.37 -0.10 -10.88 16 20 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.03 0.62 7.67 -51.93 -0.40 0.22 16 24 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 25 H -0.02 -0.62 7.96 -51.93 -0.41 -1.03 16 26 H 0.02 0.65 7.82 -51.93 -0.41 0.24 16 27 H 0.27 8.25 7.19 -40.82 -0.29 7.95 16 28 H 0.08 1.64 7.24 -51.93 -0.38 1.27 16 29 H 0.03 0.69 7.81 -51.92 -0.41 0.28 16 30 H 0.02 0.32 7.99 -51.93 -0.42 -0.09 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.35 4.54 8.39 -39.29 -0.33 4.21 16 33 H 0.34 3.43 9.08 -39.29 -0.36 3.08 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -31.11 263.72 -7.81 -38.91 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.45 Total: 2.32 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.67 Total: -14.52 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.58 Total: -51.21 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.11 -7.81 -38.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708863457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.160 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds