Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.34762 * 2 1 4 4 C 1.53995 * 110.30709 * 237.86128 * 2 1 3 5 5 N 1.47903 * 107.05650 * 242.30324 * 4 2 1 6 6 C 1.46905 * 111.00227 * 214.15818 * 5 4 2 7 7 C 1.50696 * 109.46970 * 175.78824 * 6 5 4 8 8 H 1.07992 * 120.00180 * 355.14178 * 7 6 5 9 9 C 1.37883 * 119.99529 * 175.13997 * 7 6 5 10 10 N 1.31508 * 119.99956 * 0.28011 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46529 * 60.00515 * 11 9 7 13 13 H 1.48493 * 109.47003 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47146 * 300.00623 * 11 9 7 15 15 C 1.48534 * 105.82055 * 334.67393 * 5 4 2 16 16 C 1.54590 * 110.31062 * 122.14272 * 2 1 3 17 17 H 1.08997 * 110.72966 * 22.34235 * 16 2 1 18 18 C 1.53004 * 110.72513 * 259.22862 * 16 2 1 19 19 N 1.46904 * 109.47159 * 175.00035 * 18 16 2 20 20 H 1.09003 * 109.46793 * 180.68764 * 1 2 3 21 21 H 1.09000 * 109.47188 * 300.68049 * 1 2 3 22 22 H 1.08999 * 109.47751 * 60.68770 * 1 2 3 23 23 H 1.09005 * 109.91663 * 122.95620 * 4 2 1 24 24 H 1.08996 * 110.08345 * 1.75188 * 4 2 1 25 25 H 1.08993 * 109.46812 * 55.78609 * 6 5 4 26 26 H 1.09001 * 109.46417 * 295.79069 * 6 5 4 27 27 H 0.97006 * 120.00284 * 359.71674 * 10 9 7 28 28 H 1.08999 * 110.66736 * 157.64363 * 15 5 4 29 29 H 1.09009 * 110.66329 * 280.76821 * 15 5 4 30 30 H 1.08991 * 109.47577 * 295.00404 * 18 16 2 31 31 H 1.09004 * 109.46602 * 55.00567 * 18 16 2 32 32 H 1.00898 * 110.99960 * 56.04743 * 19 18 16 33 33 H 1.00896 * 110.99920 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0644 -0.7683 -1.2229 5 7 2.8313 -1.9235 -0.7083 6 6 3.9752 -2.2261 -1.5790 7 6 4.7895 -3.3384 -0.9701 8 1 4.5335 -3.7232 0.0059 9 6 5.8615 -3.8647 -1.6593 10 7 6.1766 -3.3924 -2.8454 11 14 6.8714 -5.2430 -0.9043 12 1 5.9966 -6.4161 -0.6512 13 1 7.9592 -5.6286 -1.8386 14 1 7.4612 -4.7797 0.3773 15 6 3.2855 -1.5347 0.6514 16 6 2.0666 -0.7713 1.2276 17 1 1.3162 -1.4661 1.6049 18 6 2.5053 0.1982 2.3269 19 7 2.8969 -0.5611 3.5219 20 1 -0.3633 -1.0276 0.0123 21 1 -0.3633 0.5244 0.8838 22 1 -0.3634 0.5031 -0.8960 23 1 2.7162 -0.1225 -1.8114 24 1 1.2347 -1.1174 -1.8375 25 1 4.5965 -1.3368 -1.6847 26 1 3.6135 -2.5353 -2.5596 27 1 5.6524 -2.6764 -3.2374 28 1 3.5048 -2.4182 1.2510 29 1 4.1564 -0.8816 0.5940 30 1 3.3534 0.7859 1.9758 31 1 1.6791 0.8647 2.5745 32 1 3.6179 -1.2324 3.3036 33 1 3.1906 0.0573 4.2631 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708863457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -38.735376 kcal Electronic energy + Delta-G solvation = -13078.713325 eV Core-core repulsion = 10944.258327 eV Total energy + Delta-G solvation = -2134.454999 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40023 -36.38004 -35.05939 -33.49897 -30.34122 -28.71551 -26.48580 -25.58030 -23.31574 -21.71818 -20.87342 -18.99414 -17.02004 -16.81898 -16.06983 -15.71707 -15.60225 -15.15458 -14.65008 -14.42468 -13.89166 -13.79607 -13.55767 -13.32347 -12.71360 -12.68610 -12.40822 -11.99189 -11.85714 -11.67133 -11.57640 -11.42779 -10.75872 -10.63815 -9.65069 -9.27177 -8.74841 -6.45080 1.50748 1.59698 1.79448 2.52991 3.07847 3.23041 3.51310 3.63562 3.79385 4.01780 4.22884 4.39174 4.43595 4.58273 4.60413 4.62784 4.69587 4.81318 4.86200 4.93963 5.02528 5.12352 5.19433 5.29477 5.45159 5.67305 5.92823 6.16389 6.23630 6.33554 6.54815 6.57877 7.36417 8.64864 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039794 B = 0.009509 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.459159 B = 2943.967045 C = 3473.024898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 H 0.083 0.917 4 C 0.031 3.969 5 N -0.525 5.525 6 C 0.186 3.814 7 C -0.603 4.603 8 H 0.056 0.944 9 C -0.038 4.038 10 N -0.936 5.936 11 Si 1.122 2.878 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.061 3.939 16 C -0.078 4.078 17 H 0.084 0.916 18 C 0.079 3.921 19 N -0.855 5.855 20 H 0.050 0.950 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.021 0.979 24 H 0.075 0.925 25 H -0.045 1.045 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.341 0.659 33 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 7.769 9.955 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.101 0.899 4 C -0.097 4.097 5 N -0.249 5.249 6 C 0.059 3.941 7 C -0.641 4.641 8 H 0.074 0.926 9 C -0.235 4.235 10 N -0.573 5.573 11 Si 0.942 3.058 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.067 4.067 16 C -0.098 4.098 17 H 0.103 0.897 18 C -0.052 4.052 19 N -0.386 5.386 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.083 0.917 23 H 0.039 0.961 24 H 0.094 0.906 25 H -0.028 1.028 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.897 6.073 9.698 13.903 hybrid contribution 0.420 2.139 -0.645 2.273 sum -7.477 8.212 9.053 14.329 Atomic orbital electron populations 1.21749 0.92323 1.02026 1.02698 1.21982 0.97877 0.98504 0.92473 0.89894 1.23076 0.97513 0.91287 0.97861 1.64650 1.21876 1.35260 1.03066 1.19685 0.87774 0.94005 0.92628 1.22302 1.15200 1.20732 1.05894 0.92554 1.27519 0.98002 1.03012 0.94975 1.70929 1.41457 1.27648 1.17274 0.82879 0.74834 0.72875 0.75172 1.19429 1.20715 1.19169 1.22986 0.95683 0.97757 0.90262 1.22198 0.96365 0.96903 0.94296 0.89725 1.21731 0.99525 0.94451 0.89540 1.58733 1.48620 1.21314 1.09913 0.93110 0.90764 0.91702 0.96076 0.90635 1.02780 0.98502 0.93868 0.91872 0.96508 0.96047 0.89107 0.84726 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.89 71.98 0.64 -2.26 16 2 C -0.09 -2.50 3.17 -9.92 -0.03 -2.54 16 3 H 0.08 2.11 7.85 -2.38 -0.02 2.09 16 4 C 0.03 1.15 6.36 86.45 0.55 1.70 16 5 N -0.52 -24.26 5.34 -887.55 -4.74 -29.01 16 6 C 0.19 10.42 3.95 85.55 0.34 10.76 16 7 C -0.60 -35.68 8.68 25.60 0.22 -35.46 16 8 H 0.06 3.27 6.72 -2.91 -0.02 3.25 16 9 C -0.04 -2.24 5.46 84.66 0.46 -1.78 16 10 N -0.94 -59.31 13.65 21.45 0.29 -59.01 16 11 Si 1.12 51.13 29.90 68.60 2.05 53.18 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.06 2.46 4.56 86.65 0.40 2.86 16 16 C -0.08 -2.35 2.82 -9.59 -0.03 -2.37 16 17 H 0.08 2.64 7.86 -2.39 -0.02 2.62 16 18 C 0.08 1.90 6.15 86.30 0.53 2.43 16 19 N -0.86 -19.71 9.62 -186.71 -1.80 -21.50 16 20 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.02 0.82 7.67 -2.38 -0.02 0.81 16 24 H 0.08 2.69 7.69 -2.39 -0.02 2.68 16 25 H -0.05 -2.68 7.96 -2.39 -0.02 -2.70 16 26 H 0.00 -0.18 7.82 -2.39 -0.02 -0.20 16 27 H 0.25 16.28 7.19 -92.70 -0.67 15.61 16 28 H 0.06 2.69 7.24 -2.39 -0.02 2.67 16 29 H 0.02 0.72 7.81 -2.38 -0.02 0.70 16 30 H 0.02 0.53 7.99 -2.39 -0.02 0.52 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.34 8.50 8.39 -89.70 -0.75 7.75 16 33 H 0.35 6.26 9.08 -89.70 -0.81 5.45 16 Total: -1.00 -67.91 263.72 -1.49 -69.40 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.38 Total: 13.60 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.08 Total: -26.66 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.25 Total: -109.52 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -67.91 -1.49 -69.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708863457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.667 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds