Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.53940 * 113.73146 * 271.72729 * 15 14 12 17 17 N 1.47955 * 86.17951 * 221.91709 * 16 15 14 18 18 C 1.47958 * 90.76624 * 24.69092 * 17 16 15 19 19 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 20 20 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 24 24 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 25 25 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 26 26 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 27 27 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 28 28 H 1.09000 * 112.93939 * 43.42701 * 15 14 12 29 29 H 1.09001 * 113.75854 * 336.23780 * 16 15 14 30 30 H 1.09000 * 113.76160 * 107.59905 * 16 15 14 31 31 H 1.00901 * 111.00154 * 271.79588 * 17 16 15 32 32 H 1.08997 * 113.76075 * 220.99365 * 18 17 16 33 33 H 1.08995 * 113.86461 * 89.63375 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 0.7573 -1.9235 3.9641 17 7 0.9879 -1.5661 5.3812 18 6 1.5194 -0.2443 4.9820 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7088 1.1611 -3.4845 23 1 3.9186 0.2053 1.1592 24 1 3.8209 -1.3114 2.0860 25 1 3.8030 -1.3529 0.3068 26 1 2.0518 0.9348 2.5280 27 1 0.4722 0.1325 2.3564 28 1 2.8631 -1.3353 3.5990 29 1 -0.2275 -1.6386 3.5939 30 1 1.0225 -2.9526 3.7219 31 1 1.7126 -2.1401 5.7856 32 1 2.3936 0.0683 5.5531 33 1 0.7589 0.5331 4.9092 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710853511.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = 41.598012 kcal Electronic energy + Delta-G solvation = -13117.195820 eV Core-core repulsion = 10986.224338 eV Total energy + Delta-G solvation = -2130.971481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43966 -36.57883 -32.80001 -29.57274 -28.51703 -25.81420 -25.45248 -24.25127 -22.36279 -19.77276 -19.25143 -16.46595 -16.25154 -15.15403 -14.34688 -14.19393 -14.03542 -13.25922 -12.70697 -12.65126 -12.27980 -12.19931 -11.69448 -11.20257 -11.03900 -10.91991 -10.65017 -10.44569 -10.30161 -10.05386 -10.01893 -9.69526 -8.88495 -8.41653 -8.33602 -7.14415 -6.00794 -4.05441 3.31790 3.36203 3.38974 4.20299 4.40036 4.63853 4.96896 5.26042 5.34240 5.57666 5.66433 5.82943 5.85911 5.92706 6.09824 6.14504 6.23511 6.33012 6.45153 6.53176 6.77358 6.86874 7.06276 7.16549 7.40268 7.53180 7.74009 7.83197 8.21849 8.33468 8.61897 9.00934 9.59535 11.06041 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065921 B = 0.008192 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.646847 B = 3417.009756 C = 3551.495475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.536 5.536 13 C 0.038 3.962 14 C 0.058 3.942 15 C -0.149 4.149 16 C 0.032 3.968 17 N -0.667 5.667 18 C 0.018 3.982 19 H 0.008 0.992 20 H 0.084 0.916 21 H 0.034 0.966 22 H 0.261 0.739 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.331 0.669 32 H 0.066 0.934 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -2.308 10.061 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.261 5.261 13 C -0.111 4.111 14 C -0.071 4.071 15 C -0.169 4.169 16 C -0.097 4.097 17 N -0.293 5.293 18 C -0.113 4.113 19 H 0.027 0.973 20 H 0.103 0.897 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.888 -2.539 10.267 10.613 hybrid contribution 1.641 0.298 -1.384 2.167 sum 2.529 -2.242 8.883 9.504 Atomic orbital electron populations 1.21848 0.97743 0.99623 0.99827 1.19237 0.92326 0.91894 0.85969 0.98613 1.21132 1.31066 1.12271 0.89833 0.91959 1.24940 0.95217 0.95088 0.99020 1.69885 1.36889 1.23048 1.23502 0.86583 0.79042 0.79778 0.82125 1.21339 1.20383 1.20217 1.62130 1.08976 1.52712 1.02236 1.22219 0.89148 0.98941 1.00795 1.22128 1.00859 0.94057 0.90047 1.24239 1.00011 0.97469 0.95182 1.23597 0.99396 0.98932 0.87788 1.65083 1.41339 1.04029 1.18872 1.23677 0.99151 0.93956 0.94473 0.97316 0.89700 0.94677 0.92934 0.97205 0.94049 0.90737 0.96204 0.90478 0.89294 0.88543 0.91175 0.85543 0.91565 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.76 37.16 0.33 -2.93 16 2 C 0.21 5.40 2.06 -68.87 -0.14 5.25 16 3 H 0.00 -0.10 8.14 -51.92 -0.42 -0.53 16 4 C -0.50 -13.89 7.93 -34.44 -0.27 -14.16 16 5 H 0.06 1.70 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.54 -11.54 4.62 -236.29 -1.09 -12.63 16 13 C 0.04 0.74 9.07 60.06 0.55 1.29 16 14 C 0.06 1.06 4.63 -3.82 -0.02 1.04 16 15 C -0.15 -2.19 3.87 -89.68 -0.35 -2.54 16 16 C 0.03 0.46 8.46 -2.77 -0.02 0.44 16 17 N -0.67 -8.63 8.55 -117.03 -1.00 -9.63 16 18 C 0.02 0.23 8.47 -2.77 -0.02 0.20 16 19 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 20 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.04 0.69 6.15 -51.93 -0.32 0.37 16 25 H 0.07 1.57 6.23 -51.93 -0.32 1.25 16 26 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.08 1.44 5.52 -51.93 -0.29 1.15 16 28 H 0.09 1.30 6.20 -51.93 -0.32 0.98 16 29 H 0.10 1.45 7.89 -51.93 -0.41 1.04 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.33 3.68 8.89 -39.29 -0.35 3.33 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 258.70 15.07 3.90 3.90 Total: -1.00 -28.51 258.70 -7.71 -36.22 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.07 Total: 0.67 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.05 Total: -9.88 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.47 Total: -47.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.51 -7.71 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710853511.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.820 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds