Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.53940 * 113.73146 * 271.72729 * 15 14 12 17 17 N 1.47955 * 86.17951 * 221.91709 * 16 15 14 18 18 C 1.47958 * 90.76624 * 24.69092 * 17 16 15 19 19 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 20 20 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 24 24 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 25 25 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 26 26 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 27 27 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 28 28 H 1.09000 * 112.93939 * 43.42701 * 15 14 12 29 29 H 1.09001 * 113.75854 * 336.23780 * 16 15 14 30 30 H 1.09000 * 113.76160 * 107.59905 * 16 15 14 31 31 H 1.00901 * 111.00154 * 271.79588 * 17 16 15 32 32 H 1.08997 * 113.76075 * 220.99365 * 18 17 16 33 33 H 1.08995 * 113.86461 * 89.63375 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 0.7573 -1.9235 3.9641 17 7 0.9879 -1.5661 5.3812 18 6 1.5194 -0.2443 4.9820 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7088 1.1611 -3.4845 23 1 3.9186 0.2053 1.1592 24 1 3.8209 -1.3114 2.0860 25 1 3.8030 -1.3529 0.3068 26 1 2.0518 0.9348 2.5280 27 1 0.4722 0.1325 2.3564 28 1 2.8631 -1.3353 3.5990 29 1 -0.2275 -1.6386 3.5939 30 1 1.0225 -2.9526 3.7219 31 1 1.7126 -2.1401 5.7856 32 1 2.3936 0.0683 5.5531 33 1 0.7589 0.5331 4.9092 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710853511.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = 20.153814 kcal Electronic energy + Delta-G solvation = -13118.125710 eV Core-core repulsion = 10986.224338 eV Total energy + Delta-G solvation = -2131.901372 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.61808 -38.27880 -34.80107 -31.42733 -30.04774 -27.36459 -26.81149 -25.97142 -23.92290 -21.30446 -20.76554 -18.38572 -17.47380 -16.98959 -15.97994 -15.77384 -15.62893 -14.69615 -14.38551 -14.08483 -13.80233 -13.46527 -13.31648 -12.93936 -12.80472 -12.65968 -12.27739 -12.13530 -12.08393 -11.97608 -11.53992 -11.23580 -10.87739 -10.51461 -9.42440 -8.90802 -8.11799 -6.24060 1.42021 1.43991 1.51480 2.41773 3.13491 3.17143 3.29020 3.73990 3.94626 4.38024 4.46113 4.55036 4.63592 4.70620 4.76084 4.80405 4.86962 4.92108 5.01766 5.07487 5.08926 5.11523 5.25386 5.36950 5.50492 5.72099 5.79345 6.25558 6.39452 6.47255 6.75233 6.91093 7.45345 8.94129 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065921 B = 0.008192 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.646847 B = 3417.009756 C = 3551.495475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.042 1.042 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.541 5.541 13 C 0.041 3.959 14 C 0.060 3.940 15 C -0.145 4.145 16 C 0.032 3.968 17 N -0.668 5.668 18 C 0.027 3.973 19 H 0.030 0.970 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.262 0.738 23 H 0.002 0.998 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.344 0.656 32 H 0.088 0.912 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -3.249 11.061 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.024 1.024 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.196 1.196 12 N -0.265 5.265 13 C -0.107 4.107 14 C -0.069 4.069 15 C -0.165 4.165 16 C -0.098 4.098 17 N -0.295 5.295 18 C -0.104 4.104 19 H 0.048 0.952 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.550 -3.491 11.295 11.923 hybrid contribution 1.441 0.611 -1.631 2.260 sum 2.991 -2.880 9.664 10.518 Atomic orbital electron populations 1.21655 0.97309 0.99230 0.99614 1.19046 0.92675 0.89986 0.87497 1.02422 1.21436 1.31204 1.12359 0.91000 0.92142 1.25745 0.95361 0.95769 1.02001 1.70020 1.37765 1.24258 1.24129 0.85570 0.78716 0.78698 0.78406 1.20974 1.19630 1.19624 1.62084 1.10050 1.52340 1.02052 1.22213 0.88068 0.98674 1.01792 1.22185 1.00130 0.94573 0.89972 1.24258 1.00481 0.97409 0.94332 1.23542 0.98591 0.99027 0.88628 1.65046 1.42175 1.04346 1.17919 1.23672 0.99870 0.93779 0.93041 0.95161 0.92269 0.94945 0.92926 0.97956 0.90472 0.92403 0.96654 0.91322 0.88643 0.89715 0.90662 0.84083 0.89318 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.76 71.98 0.63 -5.34 16 2 C 0.21 11.13 2.06 44.17 0.09 11.22 16 3 H -0.04 -2.43 8.14 -2.38 -0.02 -2.45 16 4 C -0.52 -28.98 7.93 25.60 0.20 -28.78 16 5 H 0.06 3.31 6.39 -2.91 -0.02 3.29 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.54 -23.03 4.62 -901.47 -4.17 -27.20 16 13 C 0.04 1.58 9.07 127.69 1.16 2.74 16 14 C 0.06 2.12 4.63 86.30 0.40 2.52 16 15 C -0.15 -3.91 3.87 -10.14 -0.04 -3.95 16 16 C 0.03 0.84 8.46 86.41 0.73 1.57 16 17 N -0.67 -15.38 8.55 -524.18 -4.48 -19.86 16 18 C 0.03 0.60 8.47 86.41 0.73 1.33 16 19 H 0.03 1.32 6.20 -2.39 -0.01 1.31 16 20 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 21 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 23 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 24 H 0.08 2.40 6.15 -2.39 -0.01 2.39 16 25 H 0.06 2.41 6.23 -2.39 -0.01 2.39 16 26 H 0.02 0.55 8.12 -2.38 -0.02 0.53 16 27 H 0.07 2.52 5.52 -2.39 -0.01 2.50 16 28 H 0.10 2.47 6.20 -2.39 -0.01 2.46 16 29 H 0.08 2.43 7.89 -2.39 -0.02 2.42 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.34 6.50 8.89 -89.69 -0.80 5.71 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -60.55 258.70 -1.73 -62.28 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.29 Total: 10.08 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.36 Total: -17.70 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -8.41 Total: -100.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.55 -1.73 -62.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710853511.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.435 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds