Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 H 1.09007 * 109.47228 * 54.90137 * 3 2 1 5 5 C 1.50706 * 109.46823 * 174.89242 * 3 2 1 6 6 H 1.08000 * 119.99142 * 120.00270 * 5 3 2 7 7 C 1.37874 * 120.00132 * 300.00497 * 5 3 2 8 8 N 1.31510 * 120.00510 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47232 * 120.00066 * 9 7 5 12 12 H 1.48504 * 109.46829 * 240.00051 * 9 7 5 13 13 N 1.46897 * 109.47570 * 294.89839 * 3 2 1 14 14 C 1.46893 * 111.00207 * 154.14526 * 13 3 2 15 15 C 1.52994 * 109.47328 * 185.57085 * 14 13 3 16 16 C 1.53934 * 113.73630 * 271.72902 * 15 14 13 17 17 N 1.47951 * 86.18307 * 221.91764 * 16 15 14 18 18 C 1.47960 * 90.76418 * 24.68848 * 17 16 15 19 19 H 1.08996 * 109.47723 * 298.51525 * 1 2 3 20 20 H 1.09006 * 109.46835 * 58.51421 * 1 2 3 21 21 H 1.09001 * 109.47036 * 178.50726 * 1 2 3 22 22 H 1.08999 * 109.46838 * 239.99906 * 2 1 3 23 23 H 1.09000 * 109.46787 * 120.00022 * 2 1 3 24 24 H 0.96992 * 120.00490 * 180.02562 * 8 7 5 25 25 H 1.00901 * 110.99571 * 278.10011 * 13 3 2 26 26 H 1.08999 * 109.47209 * 305.57475 * 14 13 3 27 27 H 1.09006 * 109.47412 * 65.57121 * 14 13 3 28 28 H 1.09005 * 112.93605 * 43.43260 * 15 14 13 29 29 H 1.08996 * 113.75982 * 336.23892 * 16 15 14 30 30 H 1.09002 * 113.76081 * 107.60074 * 16 15 14 31 31 H 1.00899 * 111.00662 * 271.79465 * 17 16 15 32 32 H 1.09000 * 113.76235 * 220.99472 * 18 17 16 33 33 H 1.08999 * 113.85723 * 89.64118 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9821 0.8408 5 6 3.5417 1.4444 0.1265 6 1 4.1482 1.8886 -0.6489 7 6 4.1411 0.8791 1.2320 8 7 3.4025 0.3387 2.1763 9 14 6.0026 0.8809 1.3883 10 1 6.5985 1.5444 0.2008 11 1 6.3955 1.6171 2.6166 12 1 6.4936 -0.5182 1.4714 13 7 1.6535 2.0986 -1.2562 14 6 1.5546 3.5537 -1.0814 15 6 1.0177 4.1865 -2.3668 16 6 2.1149 4.5512 -3.3831 17 7 1.3591 5.8044 -3.6001 18 6 0.7595 5.6997 -2.2516 19 1 -0.3634 0.4906 0.9029 20 1 -0.3633 0.5368 -0.8764 21 1 -0.3633 -1.0273 -0.0268 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8242 -0.0587 2.9542 25 1 2.2967 1.8664 -1.9981 26 1 0.8772 3.7755 -0.2568 27 1 2.5413 3.9611 -0.8606 28 1 0.1850 3.6309 -2.7981 29 1 3.0966 4.7025 -2.9342 30 1 2.1409 3.8974 -4.2549 31 1 0.6594 5.6852 -4.3172 32 1 -0.2976 5.9635 -2.2192 33 1 1.3433 6.1866 -1.4704 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710909395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = 1.006760 kcal Electronic energy + Delta-G solvation = -12932.433631 eV Core-core repulsion = 10799.701981 eV Total energy + Delta-G solvation = -2132.731650 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48584 -37.78139 -34.41377 -32.97371 -29.69904 -27.63032 -26.84370 -24.84128 -23.43996 -21.50292 -20.76581 -18.75553 -17.48238 -16.81892 -16.11900 -15.63179 -15.22108 -14.74523 -14.51284 -13.88058 -13.69562 -13.35242 -13.25825 -13.10652 -13.03971 -12.67864 -12.49678 -12.10211 -11.91037 -11.53117 -11.40234 -11.26863 -10.99068 -10.48235 -9.42355 -9.06006 -8.06823 -6.29427 1.35810 1.38681 1.48566 2.38682 3.12239 3.13852 3.47076 3.79386 4.04286 4.49776 4.53910 4.60299 4.72423 4.75947 4.78764 4.79519 4.91968 4.95825 5.04747 5.09361 5.18924 5.36395 5.41562 5.51286 5.62853 5.76814 6.09762 6.19625 6.37757 6.46024 6.81778 7.01401 7.42317 8.89736 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.009830 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.452566 B = 2847.679512 C = 3476.223291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.219 3.781 4 H -0.003 1.003 5 C -0.559 4.559 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.079 3.921 15 C -0.142 4.142 16 C 0.021 3.979 17 N -0.667 5.667 18 C 0.025 3.975 19 H 0.029 0.971 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.262 0.738 25 H 0.329 0.671 26 H 0.050 0.950 27 H 0.010 0.990 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.346 0.654 32 H 0.090 0.910 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 5.647 -8.134 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.598 4.598 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.052 4.052 15 C -0.161 4.161 16 C -0.109 4.109 17 N -0.295 5.295 18 C -0.105 4.105 19 H 0.048 0.952 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.145 0.855 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.161 0.839 32 H 0.108 0.892 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.662 6.115 -7.861 10.996 hybrid contribution 1.396 -0.760 0.675 1.727 sum -3.266 5.355 -7.186 9.538 Atomic orbital electron populations 1.21565 0.96388 0.99841 1.00462 1.21361 0.94449 0.98355 1.00007 1.18941 0.91617 0.91633 0.86752 0.98518 1.22202 0.94106 1.37946 1.05523 0.93233 1.25678 1.02143 0.94792 0.95530 1.70008 1.36348 1.38907 1.09787 0.85632 0.81033 0.77813 0.77897 1.19452 1.20808 1.20441 1.60847 1.54147 1.07408 1.08257 1.21748 0.97615 0.88821 0.97019 1.24201 0.99307 0.96706 0.95919 1.23663 0.97501 0.91125 0.98611 1.65018 1.22976 1.36664 1.04825 1.23653 1.00639 0.93356 0.92899 0.95213 0.92247 0.93569 0.95254 0.92195 0.92867 0.85504 0.93170 0.97179 0.88115 0.90186 0.89879 0.83903 0.89163 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.82 71.98 0.71 -4.34 16 2 C -0.10 -4.97 5.45 30.60 0.17 -4.80 16 3 C 0.22 10.97 1.97 44.17 0.09 11.06 16 4 H 0.00 -0.18 7.70 -2.38 -0.02 -0.20 16 5 C -0.56 -30.37 8.47 25.60 0.22 -30.16 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.68 -27.76 5.65 -495.46 -2.80 -30.56 16 14 C 0.08 2.86 5.37 86.30 0.46 3.33 16 15 C -0.14 -3.85 4.11 -10.15 -0.04 -3.89 16 16 C 0.02 0.54 8.46 86.41 0.73 1.27 16 17 N -0.67 -15.70 8.55 -524.20 -4.48 -20.19 16 18 C 0.02 0.59 8.47 86.41 0.73 1.32 16 19 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.06 2.25 7.72 -2.38 -0.02 2.23 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.06 3.26 5.95 -2.39 -0.01 3.25 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.33 13.26 8.46 -89.69 -0.76 12.50 16 26 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 27 H 0.01 0.40 7.81 -2.38 -0.02 0.38 16 28 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 29 H 0.08 2.32 7.89 -2.39 -0.02 2.30 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.35 6.58 8.89 -89.69 -0.80 5.78 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -58.35 269.08 -1.98 -60.32 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.47 Total: 21.70 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.51 Total: -24.75 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -7.04 Total: -102.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -58.35 -1.98 -60.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710909395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.331 kcal (2) G-P(sol) polarization free energy of solvation -58.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds