Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46898 * 111.00250 * 275.00495 * 12 2 1 14 14 C 1.52999 * 109.47099 * 179.97438 * 13 12 2 15 15 H 1.08997 * 112.74332 * 55.33538 * 14 13 12 16 16 C 1.53510 * 113.47583 * 186.10475 * 14 13 12 17 17 C 1.53626 * 83.53574 * 140.77277 * 16 14 13 18 18 N 1.47473 * 113.47540 * 284.56277 * 14 13 12 19 19 C 1.46900 * 111.00465 * 106.53180 * 18 14 13 20 20 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.00903 * 110.99422 * 38.95793 * 12 2 1 25 25 H 1.08998 * 109.46833 * 300.00296 * 13 12 2 26 26 H 1.09006 * 109.47097 * 59.99750 * 13 12 2 27 27 H 1.09007 * 114.17125 * 254.43751 * 16 14 13 28 28 H 1.09000 * 114.16994 * 27.13949 * 16 14 13 29 29 H 1.09008 * 113.51354 * 219.24229 * 17 16 14 30 30 H 1.09000 * 113.48007 * 88.80012 * 17 16 14 31 31 H 1.09003 * 109.46931 * 59.99618 * 19 18 14 32 32 H 1.09000 * 109.47482 * 179.97438 * 19 18 14 33 33 H 1.09004 * 109.46886 * 300.00176 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0198 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5952 -0.5332 3.5745 15 1 3.5548 -1.0195 3.3995 16 6 2.5570 0.2981 4.8644 17 6 2.1119 -1.0278 5.4999 18 7 1.5871 -1.4234 4.1796 19 6 1.8892 -2.8322 3.8936 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.7087 1.1613 -3.4844 24 1 1.4496 -1.4979 1.4100 25 1 2.7588 1.0462 2.1182 26 1 1.0870 0.6162 2.5526 27 1 3.5336 0.6483 5.1988 28 1 1.7928 1.0754 4.8720 29 1 1.3370 -0.9086 6.2573 30 1 2.9422 -1.6466 5.8403 31 1 2.8680 -3.0841 4.3019 32 1 1.1306 -3.4668 4.3517 33 1 1.8935 -2.9912 2.8152 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712544355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = 32.790189 kcal Electronic energy + Delta-G solvation = -12941.436155 eV Core-core repulsion = 10810.082738 eV Total energy + Delta-G solvation = -2131.353417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96197 -35.66505 -32.44181 -30.60782 -29.14195 -25.90644 -25.03521 -24.03497 -22.16376 -20.09108 -19.39857 -16.42071 -15.89522 -15.12574 -14.64229 -14.54366 -14.05006 -13.13680 -12.99852 -12.67878 -12.12018 -11.81050 -11.54577 -11.39914 -11.06510 -10.92728 -10.75235 -10.64939 -10.52179 -10.17438 -10.05080 -9.62949 -8.94871 -8.70385 -8.30752 -7.12600 -5.93020 -3.96148 3.35783 3.41577 3.45884 4.16688 4.47604 4.60263 4.89350 5.21628 5.37014 5.38322 5.47959 5.60720 5.69216 5.74704 5.82068 5.85743 6.06365 6.21302 6.31933 6.51868 6.61525 6.80133 6.95385 7.20131 7.23713 7.47865 7.81966 7.95122 8.35706 8.64123 8.71192 9.11132 9.68969 11.14030 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060970 B = 0.007633 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.130305 B = 3667.545502 C = 3825.367738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.685 5.685 13 C 0.076 3.924 14 C 0.033 3.967 15 H 0.081 0.919 16 C -0.144 4.144 17 C -0.005 4.005 18 N -0.474 5.474 19 C -0.011 4.011 20 H 0.026 0.974 21 H 0.006 0.994 22 H 0.087 0.913 23 H 0.259 0.741 24 H 0.325 0.675 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -2.708 12.806 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.315 5.315 13 C -0.054 4.054 14 C -0.076 4.076 15 H 0.099 0.901 16 C -0.182 4.182 17 C -0.134 4.134 18 N -0.196 5.196 19 C -0.160 4.160 20 H 0.045 0.955 21 H 0.025 0.975 22 H 0.106 0.894 23 H 0.069 0.931 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.054 -2.482 12.308 12.723 hybrid contribution 0.139 -0.609 -0.517 0.810 sum 2.193 -3.090 11.792 12.386 Atomic orbital electron populations 1.22396 1.00702 0.99110 1.00384 1.19158 0.89648 0.94325 0.86596 0.95031 1.21181 1.30009 1.12355 0.89725 0.92083 1.24958 0.95387 0.95258 0.99009 1.69895 1.37374 1.23308 1.23231 0.86516 0.78419 0.80002 0.82536 1.20804 1.19996 1.21429 1.60863 1.57883 1.09276 1.03474 1.21791 0.98697 0.95294 0.89632 1.23511 0.95033 0.94262 0.94824 0.90072 1.23214 1.01855 0.96804 0.96352 1.23783 0.98812 0.96580 0.94202 1.68883 1.41581 1.04731 1.04421 1.22898 0.99133 0.90924 1.03054 0.95501 0.97534 0.89424 0.93137 0.85808 0.91504 0.95481 0.90877 0.89015 0.90200 0.91768 0.95030 0.91706 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.94 37.16 0.33 -3.87 16 2 C 0.21 5.49 2.57 -68.87 -0.18 5.31 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -14.05 8.84 -34.44 -0.30 -14.36 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.29 11.32 55.43 0.63 -25.66 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 N -0.69 -15.16 6.23 -107.95 -0.67 -15.84 16 13 C 0.08 1.43 5.50 -3.83 -0.02 1.41 16 14 C 0.03 0.50 3.26 -71.45 -0.23 0.27 16 15 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 16 C -0.14 -1.75 8.02 -26.14 -0.21 -1.96 16 17 C 0.00 -0.05 7.70 -7.49 -0.06 -0.11 16 18 N -0.47 -6.96 6.52 -244.63 -1.60 -8.56 16 19 C -0.01 -0.15 9.68 60.06 0.58 0.44 16 20 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 21 H 0.01 0.13 7.45 -51.93 -0.39 -0.25 16 22 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.33 7.04 7.33 -39.29 -0.29 6.76 16 25 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 26 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.13 8.12 -51.93 -0.42 0.70 16 29 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 31 H 0.03 0.38 7.52 -51.93 -0.39 -0.01 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.17 7.01 -51.93 -0.36 0.80 16 LS Contribution 265.66 15.07 4.00 4.00 Total: -1.00 -29.27 265.66 -8.25 -37.52 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.41 Total: 3.09 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.18 Total: -11.43 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -1.64 Total: -50.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.27 -8.25 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712544355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.311 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds