Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47187 * 240.00257 * 2 1 3 5 5 C 1.50703 * 109.47166 * 175.00041 * 4 2 1 6 6 H 1.07993 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99866 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47162 * 89.99375 * 9 7 5 11 11 H 1.48498 * 109.47427 * 210.00027 * 9 7 5 12 12 H 1.48504 * 109.46730 * 330.00011 * 9 7 5 13 13 N 1.46903 * 109.47107 * 119.99975 * 2 1 3 14 14 C 1.47473 * 110.99975 * 33.18428 * 13 2 1 15 15 C 1.53517 * 87.92999 * 221.29459 * 14 13 2 16 16 C 1.53002 * 114.16834 * 139.67213 * 15 14 13 17 17 N 1.46900 * 109.47152 * 91.15861 * 16 15 14 18 18 C 1.47477 * 110.99918 * 297.20845 * 13 2 1 19 19 H 1.09001 * 109.47080 * 49.92238 * 1 2 3 20 20 H 1.08998 * 109.47193 * 169.92378 * 1 2 3 21 21 H 1.09000 * 109.46997 * 289.92074 * 1 2 3 22 22 H 1.09001 * 109.47244 * 54.99563 * 4 2 1 23 23 H 1.08998 * 109.47026 * 294.99774 * 4 2 1 24 24 H 0.97000 * 120.00248 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.48180 * 336.06000 * 14 13 2 26 26 H 1.09004 * 113.47718 * 106.53175 * 14 13 2 27 27 H 1.08999 * 114.16749 * 272.37588 * 15 14 13 28 28 H 1.09004 * 109.47025 * 211.15817 * 16 15 14 29 29 H 1.09002 * 109.47269 * 331.15929 * 16 15 14 30 30 H 1.00898 * 111.00007 * 56.04683 * 17 16 15 31 31 H 1.00907 * 110.99872 * 179.97438 * 17 16 15 32 32 H 1.08997 * 113.48016 * 253.46959 * 18 13 2 33 33 H 1.08998 * 113.47592 * 23.88350 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.7009 -2.2127 -1.7261 11 1 6.5289 -1.0674 -3.8567 12 1 6.5260 0.2051 -1.7924 13 7 2.0197 -0.6925 1.1995 14 6 1.1095 -1.7863 1.5868 15 6 1.3059 -1.3576 3.0478 16 6 0.0294 -1.4003 3.8902 17 7 -0.0910 -2.7171 4.5303 18 6 1.6023 0.0139 2.4249 19 1 -0.3633 0.6616 -0.7863 20 1 -0.3633 -1.0118 -0.1798 21 1 -0.3633 0.3501 0.9662 22 1 1.6053 -0.2617 -2.1370 23 1 1.7517 -1.7714 -1.2056 24 1 4.0607 -2.2435 -4.0355 25 1 0.0893 -1.6501 1.2277 26 1 1.5050 -2.7783 1.3685 27 1 2.1629 -1.8201 3.5372 28 1 0.0737 -0.6265 4.6566 29 1 -0.8351 -1.2277 3.2490 30 1 0.7286 -2.9284 5.0795 31 1 -0.9268 -2.7704 5.0932 32 1 2.4155 0.5475 2.9169 33 1 0.7143 0.6312 2.2892 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712559329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = 35.335542 kcal Electronic energy + Delta-G solvation = -13011.150492 eV Core-core repulsion = 10879.907449 eV Total energy + Delta-G solvation = -2131.243043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13128 -35.01835 -33.25629 -31.65276 -27.48724 -27.34228 -25.50098 -23.75366 -22.48010 -19.74291 -18.45707 -16.18532 -16.05531 -15.40970 -14.99841 -14.58957 -14.34183 -13.58069 -13.16985 -12.90551 -12.15915 -11.93157 -11.66075 -11.38065 -11.16587 -10.69102 -10.61447 -10.54611 -10.28689 -10.06399 -9.74729 -9.16043 -8.97280 -8.71415 -8.22430 -7.91116 -5.84473 -3.82357 3.42689 3.47898 3.52190 4.38487 4.59565 4.65276 4.90412 5.11956 5.49429 5.53652 5.54239 5.63875 5.67334 5.74710 5.85839 5.99354 6.04994 6.14264 6.28275 6.46298 6.55562 6.68709 6.96598 7.05337 7.21475 7.34918 7.61813 7.84825 8.02275 8.15811 8.62500 9.23028 9.78983 11.27729 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048866 B = 0.008304 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.856644 B = 3370.952154 C = 3572.963431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.068 0.932 4 C 0.036 3.964 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.440 5.440 14 C 0.003 3.997 15 C -0.116 4.116 16 C 0.073 3.927 17 N -0.848 5.848 18 C -0.009 4.009 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.257 0.743 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.337 0.663 32 H 0.074 0.926 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 1.951 13.187 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.059 4.059 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.161 5.161 14 C -0.126 4.126 15 C -0.136 4.136 16 C -0.058 4.058 17 N -0.378 5.378 18 C -0.139 4.139 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.093 0.907 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.573 1.475 12.081 13.832 hybrid contribution 0.232 0.760 0.774 1.109 sum -6.341 2.236 12.855 14.507 Atomic orbital electron populations 1.22556 0.99316 1.01751 1.00460 1.22332 0.90591 0.98886 0.94110 0.91348 1.19061 0.96283 0.95254 0.89568 1.21170 0.91880 1.32994 1.06917 0.92322 1.25010 0.98093 0.95868 0.95972 1.69968 1.35202 1.36970 1.12375 0.86608 0.86353 0.78339 0.76731 1.20872 1.21575 1.20060 1.69271 1.41729 1.05142 0.99969 1.23962 0.97504 0.98347 0.92769 1.22743 0.97268 0.97709 0.95850 1.21782 0.98182 0.89060 0.96752 1.58675 1.07588 1.31328 1.40176 1.23891 0.99650 0.95828 0.94488 0.92555 0.92181 0.93681 0.96438 0.96482 0.93328 0.90491 0.90365 0.88639 0.95729 0.91155 0.84791 0.85144 0.90724 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 7.72 37.16 0.29 -2.88 16 2 C 0.05 1.05 2.36 -67.71 -0.16 0.89 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.04 0.95 4.57 -27.88 -0.13 0.82 16 5 C -0.49 -14.39 8.84 -34.44 -0.30 -14.69 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -28.11 13.29 55.43 0.74 -27.37 16 9 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.44 -8.83 6.06 -236.60 -1.43 -10.26 16 14 C 0.00 0.05 6.83 -7.55 -0.05 0.00 16 15 C -0.12 -1.66 4.24 -90.09 -0.38 -2.04 16 16 C 0.07 0.84 6.70 -3.82 -0.03 0.81 16 17 N -0.85 -8.84 9.62 -10.37 -0.10 -8.94 16 18 C -0.01 -0.14 7.11 -7.55 -0.05 -0.19 16 19 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 20 H 0.06 1.05 6.52 -51.93 -0.34 0.72 16 21 H 0.04 0.67 5.83 -51.93 -0.30 0.37 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.02 0.48 8.06 -51.93 -0.42 0.07 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.08 1.29 4.56 -51.93 -0.24 1.05 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.83 7.81 -51.93 -0.41 0.42 16 30 H 0.34 3.16 8.99 -39.29 -0.35 2.80 16 31 H 0.34 2.77 9.08 -39.29 -0.36 2.41 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.91 5.94 -51.93 -0.31 0.60 16 LS Contribution 263.48 15.07 3.97 3.97 Total: -1.00 -31.72 263.48 -7.98 -39.71 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.22 Total: 1.10 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.91 Total: -15.89 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.80 Total: -46.57 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.72 -7.98 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712559329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.042 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds