Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47187 * 240.00257 * 2 1 3 5 5 C 1.50703 * 109.47166 * 175.00041 * 4 2 1 6 6 H 1.07993 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99866 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47162 * 89.99375 * 9 7 5 11 11 H 1.48498 * 109.47427 * 210.00027 * 9 7 5 12 12 H 1.48504 * 109.46730 * 330.00011 * 9 7 5 13 13 N 1.46903 * 109.47107 * 119.99975 * 2 1 3 14 14 C 1.47473 * 110.99975 * 33.18428 * 13 2 1 15 15 C 1.53517 * 87.92999 * 221.29459 * 14 13 2 16 16 C 1.53002 * 114.16834 * 139.67213 * 15 14 13 17 17 N 1.46900 * 109.47152 * 91.15861 * 16 15 14 18 18 C 1.47477 * 110.99918 * 297.20845 * 13 2 1 19 19 H 1.09001 * 109.47080 * 49.92238 * 1 2 3 20 20 H 1.08998 * 109.47193 * 169.92378 * 1 2 3 21 21 H 1.09000 * 109.46997 * 289.92074 * 1 2 3 22 22 H 1.09001 * 109.47244 * 54.99563 * 4 2 1 23 23 H 1.08998 * 109.47026 * 294.99774 * 4 2 1 24 24 H 0.97000 * 120.00248 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.48180 * 336.06000 * 14 13 2 26 26 H 1.09004 * 113.47718 * 106.53175 * 14 13 2 27 27 H 1.08999 * 114.16749 * 272.37588 * 15 14 13 28 28 H 1.09004 * 109.47025 * 211.15817 * 16 15 14 29 29 H 1.09002 * 109.47269 * 331.15929 * 16 15 14 30 30 H 1.00898 * 111.00007 * 56.04683 * 17 16 15 31 31 H 1.00907 * 110.99872 * 179.97438 * 17 16 15 32 32 H 1.08997 * 113.48016 * 253.46959 * 18 13 2 33 33 H 1.08998 * 113.47592 * 23.88350 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.7009 -2.2127 -1.7261 11 1 6.5289 -1.0674 -3.8567 12 1 6.5260 0.2051 -1.7924 13 7 2.0197 -0.6925 1.1995 14 6 1.1095 -1.7863 1.5868 15 6 1.3059 -1.3576 3.0478 16 6 0.0294 -1.4003 3.8902 17 7 -0.0910 -2.7171 4.5303 18 6 1.6023 0.0139 2.4249 19 1 -0.3633 0.6616 -0.7863 20 1 -0.3633 -1.0118 -0.1798 21 1 -0.3633 0.3501 0.9662 22 1 1.6053 -0.2617 -2.1370 23 1 1.7517 -1.7714 -1.2056 24 1 4.0607 -2.2435 -4.0355 25 1 0.0893 -1.6501 1.2277 26 1 1.5050 -2.7783 1.3685 27 1 2.1629 -1.8201 3.5372 28 1 0.0737 -0.6265 4.6566 29 1 -0.8351 -1.2277 3.2490 30 1 0.7286 -2.9284 5.0795 31 1 -0.9268 -2.7704 5.0932 32 1 2.4155 0.5475 2.9169 33 1 0.7143 0.6312 2.2892 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712559329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = 10.109616 kcal Electronic energy + Delta-G solvation = -13012.244370 eV Core-core repulsion = 10879.907449 eV Total energy + Delta-G solvation = -2132.336921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.51779 -36.35347 -34.96184 -33.42075 -29.38244 -28.68008 -26.83665 -25.41485 -24.08848 -21.13026 -19.93460 -18.42872 -17.27789 -16.70359 -16.53834 -16.04390 -15.66056 -15.02540 -14.50900 -14.24460 -14.07154 -13.59362 -13.32708 -12.96790 -12.68880 -12.53558 -12.40980 -12.09414 -11.85339 -11.52914 -11.30275 -11.16469 -10.99588 -10.52012 -9.54165 -9.35488 -8.13515 -6.19613 1.38898 1.41221 1.51833 2.44885 3.17360 3.32365 3.37804 3.80186 4.08159 4.14937 4.30735 4.39880 4.44345 4.51677 4.60974 4.72583 4.80474 4.82871 4.91074 5.03043 5.16696 5.19039 5.39195 5.47689 5.62438 5.77385 5.90312 6.29271 6.30562 6.50905 6.68455 6.94088 7.46446 8.98905 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048866 B = 0.008304 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.856644 B = 3370.952154 C = 3572.963431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.057 3.943 3 H 0.062 0.938 4 C 0.041 3.959 5 C -0.506 4.506 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.962 3.038 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.481 5.481 14 C -0.002 4.002 15 C -0.096 4.096 16 C 0.081 3.919 17 N -0.860 5.860 18 C -0.002 4.002 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.078 0.922 22 H -0.008 1.008 23 H -0.015 1.015 24 H 0.260 0.740 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.346 0.654 31 H 0.351 0.649 32 H 0.080 0.920 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 2.758 15.018 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.052 4.052 3 H 0.081 0.919 4 C 0.004 3.996 5 C -0.545 4.545 6 H 0.073 0.927 7 C -0.204 4.204 8 N -0.583 5.583 9 Si 0.787 3.213 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.189 1.189 13 N -0.203 5.203 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.050 4.050 17 N -0.392 5.392 18 C -0.131 4.131 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.096 0.904 22 H 0.011 0.989 23 H 0.004 0.996 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.099 0.901 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.712 2.287 13.936 15.637 hybrid contribution 0.262 0.477 0.206 0.582 sum -6.451 2.765 14.142 15.788 Atomic orbital electron populations 1.22420 0.96239 1.01786 1.02567 1.22042 0.93062 0.97557 0.92521 0.91924 1.18916 0.95275 0.93776 0.91659 1.21503 0.93379 1.32803 1.06796 0.92665 1.25930 1.03398 0.95454 0.95585 1.70099 1.37284 1.37845 1.13048 0.85497 0.80007 0.78706 0.77091 1.20333 1.20764 1.18942 1.69159 1.43334 1.06874 1.00955 1.24019 0.97267 0.96333 0.95499 1.22609 0.98739 0.96022 0.94141 1.21658 0.96240 0.90236 0.96894 1.58623 1.08716 1.30868 1.40974 1.23933 1.00562 0.96525 0.92072 0.92011 0.92761 0.90359 0.98927 0.99624 0.93131 0.89542 0.93306 0.88983 0.93544 0.91061 0.84074 0.83532 0.90128 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.74 7.72 71.98 0.56 -5.18 16 2 C 0.06 2.43 2.36 44.91 0.11 2.53 16 3 H 0.06 2.69 8.14 -2.39 -0.02 2.68 16 4 C 0.04 2.26 4.57 29.85 0.14 2.40 16 5 C -0.51 -30.32 8.84 25.60 0.23 -30.10 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 8 N -0.94 -59.84 13.29 21.45 0.28 -59.56 16 9 Si 0.96 46.99 29.54 68.60 2.03 49.02 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.48 -19.14 6.06 -902.46 -5.47 -24.61 16 14 C 0.00 -0.08 6.83 83.58 0.57 0.49 16 15 C -0.10 -2.53 4.24 -10.45 -0.04 -2.57 16 16 C 0.08 1.58 6.70 86.30 0.58 2.16 16 17 N -0.86 -15.62 9.62 -186.71 -1.80 -17.42 16 18 C 0.00 -0.05 7.11 83.58 0.59 0.54 16 19 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 20 H 0.05 1.87 6.52 -2.39 -0.02 1.85 16 21 H 0.08 2.09 5.83 -2.39 -0.01 2.07 16 22 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 23 H -0.01 -0.89 8.06 -2.39 -0.02 -0.91 16 24 H 0.26 15.57 8.31 -92.71 -0.77 14.79 16 25 H 0.09 2.81 4.56 -2.39 -0.01 2.80 16 26 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.42 7.81 -2.39 -0.02 1.40 16 30 H 0.35 5.57 8.99 -89.70 -0.81 4.76 16 31 H 0.35 4.75 9.08 -89.69 -0.81 3.93 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.07 5.94 -2.39 -0.01 2.06 16 Total: -1.00 -69.38 263.48 -2.29 -71.67 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -0.52 Total: 10.63 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.19 Total: -29.74 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -6.98 Total: -101.58 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -69.38 -2.29 -71.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712559329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.784 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds