Wall clock time and date at job start Mon Mar 30 2020 01:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47439 * 110.99961 * 69.87543 * 10 9 7 12 12 C 1.54322 * 107.23490 * 123.25626 * 11 10 9 13 13 C 1.55135 * 103.02006 * 22.28319 * 12 11 10 14 14 H 1.08997 * 110.99015 * 82.43462 * 13 12 11 15 15 C 1.53001 * 110.98956 * 206.21948 * 13 12 11 16 16 C 1.52995 * 109.47223 * 293.54368 * 15 13 12 17 17 N 1.46895 * 109.47241 * 180.02562 * 16 15 13 18 18 C 1.47853 * 110.99956 * 190.71596 * 10 9 7 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09003 * 109.89080 * 242.65955 * 11 10 9 23 23 H 1.08997 * 109.89286 * 3.84786 * 11 10 9 24 24 H 1.09003 * 110.70500 * 140.67082 * 12 11 10 25 25 H 1.09004 * 110.70214 * 263.90079 * 12 11 10 26 26 H 1.08997 * 109.46986 * 53.54840 * 15 13 12 27 27 H 1.08999 * 109.47079 * 173.54566 * 15 13 12 28 28 H 1.09001 * 109.46939 * 300.00549 * 16 15 13 29 29 H 1.08999 * 109.46931 * 60.00108 * 16 15 13 30 30 H 1.00903 * 111.00015 * 56.05075 * 17 16 15 31 31 H 1.00902 * 111.00573 * 179.97438 * 17 16 15 32 32 H 1.09002 * 110.36766 * 332.46788 * 18 10 9 33 33 H 1.08997 * 110.37443 * 94.80755 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9088 -3.7096 1.2930 12 6 2.6619 -5.1290 1.8459 13 6 2.3082 -5.9431 0.5735 14 1 3.2099 -6.2582 0.0484 15 6 1.4299 -7.1471 0.9198 16 6 2.2333 -8.1385 1.7639 17 7 1.3902 -9.2947 2.0958 18 6 1.5190 -4.8998 -0.2561 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 3.9770 -3.5494 1.1464 23 1 2.5121 -2.9676 1.9858 24 1 3.5634 -5.5216 2.3164 25 1 1.8281 -5.1295 2.5479 26 1 0.5595 -6.8117 1.4835 27 1 1.1023 -7.6340 0.0013 28 1 3.1038 -8.4738 1.2001 29 1 2.5609 -7.6516 2.6824 30 1 1.0215 -9.7250 1.2609 31 1 1.8985 -9.9649 2.6532 32 1 0.4838 -4.8507 0.0818 33 1 1.5615 -5.1475 -1.3167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723678431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:51 Heat of formation + Delta-G solvation = -36.197921 kcal Electronic energy + Delta-G solvation = -12727.696914 eV Core-core repulsion = 10593.351948 eV Total energy + Delta-G solvation = -2134.344966 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03645 -36.61613 -35.00785 -33.03940 -30.51864 -29.16132 -27.01690 -24.37263 -23.17428 -21.51424 -20.92651 -18.37663 -17.32603 -16.90709 -16.44781 -15.94814 -15.38508 -14.96830 -14.72290 -14.26280 -14.15840 -13.64856 -13.22459 -12.95424 -12.75667 -12.54829 -12.47450 -12.19183 -11.83186 -11.64762 -11.53785 -11.38107 -11.22084 -10.62990 -9.58079 -9.01697 -8.22137 -6.33568 1.39627 1.43705 1.51793 2.39484 3.09610 3.33311 3.54571 3.80820 3.87075 4.12101 4.29785 4.37353 4.46498 4.63436 4.67315 4.79244 4.90511 4.94455 4.98639 5.08728 5.10137 5.15418 5.29407 5.31123 5.50356 5.64377 6.03354 6.26380 6.33033 6.58447 6.64029 6.82661 7.36753 8.88893 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.086675 B = 0.006565 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.969375 B = 4263.923428 C = 4392.720660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.205 3.795 10 N -0.543 5.543 11 C 0.049 3.951 12 C -0.126 4.126 13 C -0.080 4.080 14 H 0.093 0.907 15 C -0.099 4.099 16 C 0.067 3.933 17 N -0.863 5.863 18 C 0.041 3.959 19 H 0.265 0.735 20 H -0.039 1.039 21 H -0.002 1.002 22 H 0.070 0.930 23 H 0.029 0.971 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.346 0.654 31 H 0.351 0.649 32 H 0.023 0.977 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -15.004 3.147 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.268 5.268 11 C -0.079 4.079 12 C -0.164 4.164 13 C -0.100 4.100 14 H 0.111 0.889 15 C -0.138 4.138 16 C -0.064 4.064 17 N -0.394 5.394 18 C -0.087 4.087 19 H 0.074 0.926 20 H -0.021 1.021 21 H 0.016 0.984 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.042 0.958 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.418 -14.251 3.132 15.564 hybrid contribution -0.041 0.522 -0.032 0.525 sum 5.378 -13.728 3.101 15.066 Atomic orbital electron populations 1.70088 1.07840 1.28074 1.51647 1.25976 0.95794 1.03390 0.94612 0.85382 0.78135 0.77577 0.79191 1.19221 1.20606 1.19138 1.21441 0.93586 0.91174 1.50334 0.92101 1.19519 0.90096 0.89477 0.93032 1.63555 1.28386 1.03201 1.31612 1.22685 0.99062 0.96692 0.89479 1.22831 1.02220 0.93952 0.97378 1.22206 0.98747 0.93779 0.95227 0.88865 1.21423 0.97845 0.94607 0.99892 1.21712 0.93944 0.91628 0.99086 1.58680 1.41987 1.12698 1.26082 1.23127 0.95730 0.89445 1.00386 0.92593 1.02129 0.98384 0.91185 0.95230 0.88565 0.92354 0.92899 0.91173 0.94355 0.91210 0.84093 0.83602 0.95816 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -31.31 8.66 25.60 0.22 -31.09 16 8 H 0.06 3.54 7.78 -2.91 -0.02 3.52 16 9 C 0.21 11.65 4.30 85.56 0.37 12.01 16 10 N -0.54 -25.05 5.15 -890.07 -4.58 -29.63 16 11 C 0.05 1.95 6.39 86.65 0.55 2.51 16 12 C -0.13 -3.74 5.58 31.77 0.18 -3.56 16 13 C -0.08 -2.23 3.06 -9.41 -0.03 -2.26 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.10 -2.30 4.99 30.59 0.15 -2.14 16 16 C 0.07 1.25 6.63 86.30 0.57 1.83 16 17 N -0.86 -14.51 9.62 -186.73 -1.80 -16.31 16 18 C 0.04 1.54 6.15 86.77 0.53 2.07 16 19 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 20 H -0.04 -2.39 7.96 -2.39 -0.02 -2.41 16 21 H 0.00 -0.12 8.07 -2.39 -0.02 -0.14 16 22 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.03 1.34 7.31 -2.39 -0.02 1.32 16 24 H 0.10 2.28 8.13 -2.39 -0.02 2.26 16 25 H 0.06 1.80 8.01 -2.39 -0.02 1.78 16 26 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.36 7.50 -2.39 -0.02 1.35 16 30 H 0.35 4.93 8.99 -89.69 -0.81 4.13 16 31 H 0.35 4.49 9.08 -89.69 -0.81 3.67 16 32 H 0.02 0.95 7.71 -2.39 -0.02 0.93 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -67.34 267.83 -1.59 -68.94 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.54 Total: 7.62 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 3.01 Total: -20.17 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -6.09 Total: -103.77 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.34 -1.59 -68.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.737 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds