Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99634 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46696 * 90.00211 * 9 7 5 11 11 H 1.48503 * 109.47125 * 210.00238 * 9 7 5 12 12 H 1.48496 * 109.46999 * 330.00355 * 9 7 5 13 13 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 14 14 C 1.46908 * 110.99837 * 84.99962 * 13 2 1 15 15 C 1.53938 * 113.73439 * 251.72773 * 14 13 2 16 16 N 1.47954 * 86.18053 * 221.92381 * 15 14 13 17 17 C 1.46898 * 110.99960 * 137.58775 * 16 15 14 18 18 C 1.47954 * 90.76553 * 24.69210 * 16 15 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 23 23 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 24 24 H 0.97001 * 119.99767 * 179.97438 * 8 7 5 25 25 H 1.00898 * 111.00604 * 208.95432 * 13 2 1 26 26 H 1.08991 * 112.93866 * 23.43441 * 14 13 2 27 27 H 1.09004 * 113.75909 * 336.24178 * 15 14 13 28 28 H 1.08997 * 113.75341 * 107.60170 * 15 14 13 29 29 H 1.09007 * 109.47175 * 320.63400 * 17 16 15 30 30 H 1.09000 * 109.47624 * 80.63694 * 17 16 15 31 31 H 1.08996 * 109.47307 * 200.64029 * 17 16 15 32 32 H 1.09004 * 113.75725 * 220.99284 * 18 16 15 33 33 H 1.08994 * 113.76185 * 89.63002 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2991 9 14 6.0922 -1.0622 2.4363 10 1 6.4709 0.1600 3.1899 11 1 6.6443 -2.2578 3.1225 12 1 6.6413 -0.9844 1.0588 13 7 2.0197 -0.6925 -1.1993 14 6 2.0825 0.2226 -2.3468 15 6 1.0028 -0.0434 -3.4113 16 7 2.0715 0.1823 -4.4093 17 6 1.9947 -0.8040 -5.4951 18 6 3.1034 -0.1980 -3.4195 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.6054 -0.2617 2.1370 23 1 1.7517 -1.7714 1.2056 24 1 4.0608 -2.2459 4.0341 25 1 2.9173 -1.1205 -1.0286 26 1 2.1618 1.2689 -2.0520 27 1 0.6189 -1.0636 -3.4021 28 1 0.2143 0.7088 -3.4344 29 1 1.7399 -1.7801 -5.0820 30 1 1.2286 -0.5002 -6.2085 31 1 2.9585 -0.8639 -6.0005 32 1 3.9933 0.4308 -3.4493 33 1 3.3340 -1.2632 -3.4127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829172740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = 23.195765 kcal Electronic energy + Delta-G solvation = -12891.221924 eV Core-core repulsion = 10759.452461 eV Total energy + Delta-G solvation = -2131.769463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65141 -35.90062 -32.64452 -30.73535 -27.97164 -27.40158 -25.83485 -23.38840 -22.43096 -19.65738 -19.18150 -16.38221 -15.79927 -15.56477 -15.13640 -14.49301 -13.97831 -13.36806 -13.05586 -12.53576 -12.41188 -11.76652 -11.62570 -11.45191 -11.28577 -11.14126 -10.93407 -10.60258 -10.52226 -10.23703 -10.13425 -9.23857 -9.08268 -8.71649 -8.40976 -7.73551 -6.04170 -4.07517 3.28659 3.35582 3.37611 4.12266 4.41788 4.77274 4.81241 5.18625 5.30650 5.38077 5.54528 5.61189 5.71732 5.82845 5.86576 5.97125 5.98512 6.19593 6.28372 6.36776 6.41171 6.57288 6.93125 6.95008 7.16013 7.52230 7.62553 7.95485 8.04829 8.23356 8.35876 8.98866 9.56850 11.06704 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.008815 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.286978 B = 3175.557215 C = 3722.149920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.019 3.981 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.060 3.940 15 C 0.012 3.988 16 N -0.490 5.490 17 C -0.008 4.008 18 C -0.005 4.005 19 H 0.053 0.947 20 H 0.037 0.963 21 H 0.047 0.953 22 H 0.021 0.979 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.357 0.643 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 2.233 -11.685 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.018 4.018 5 C -0.563 4.563 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.051 4.051 15 C -0.118 4.118 16 N -0.212 5.212 17 C -0.157 4.157 18 C -0.135 4.135 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.180 0.820 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.494 2.487 -12.038 12.779 hybrid contribution 1.766 -0.292 0.636 1.899 sum -1.728 2.194 -11.403 11.740 Atomic orbital electron populations 1.21788 0.96698 1.01226 0.99528 1.21700 0.93433 0.95830 0.91316 0.95099 1.19295 0.95416 0.96185 0.90923 1.21180 0.92235 1.34513 1.08372 0.92984 1.24995 0.98257 0.95155 0.95708 1.69963 1.35530 1.35512 1.11969 0.86632 0.85877 0.77542 0.78166 1.20729 1.21205 1.19904 1.60703 1.34335 1.31217 1.04477 1.23408 0.94474 0.96445 0.90801 1.24172 0.95396 1.01195 0.91029 1.68393 1.04896 1.42452 1.05497 1.22817 1.02133 0.94474 0.96284 1.24251 0.96600 1.00547 0.92053 0.92773 0.94396 0.93377 0.96038 0.95641 0.92936 0.82023 0.90687 0.90579 0.90243 0.94604 0.91581 0.91786 0.89770 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.42 37.16 0.35 -2.07 16 2 C 0.09 1.79 2.58 -67.72 -0.17 1.61 16 3 H 0.03 0.66 7.47 -51.93 -0.39 0.27 16 4 C 0.02 0.48 4.57 -27.89 -0.13 0.36 16 5 C -0.52 -14.29 8.12 -34.44 -0.28 -14.57 16 6 H 0.05 1.38 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.67 -12.73 6.38 -100.97 -0.64 -13.37 16 14 C 0.06 0.98 4.15 -69.40 -0.29 0.69 16 15 C 0.01 0.17 7.77 -2.77 -0.02 0.15 16 16 N -0.49 -6.89 6.56 -246.77 -1.62 -8.51 16 17 C -0.01 -0.09 9.64 60.06 0.58 0.49 16 18 C -0.01 -0.08 7.56 -2.77 -0.02 -0.10 16 19 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 20 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.36 7.33 7.03 -39.29 -0.28 7.06 16 26 H 0.08 1.27 7.48 -51.93 -0.39 0.88 16 27 H 0.08 1.11 7.62 -51.93 -0.40 0.72 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.42 7.62 -51.93 -0.40 0.02 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.09 7.92 -51.93 -0.41 0.67 16 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -28.44 270.48 -8.13 -36.58 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.58 Total: 2.44 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.08 Total: -11.83 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -1.52 Total: -47.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.44 -8.13 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.773 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds