Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.50676 * 2 1 4 4 C 1.53122 * 109.50616 * 239.91823 * 2 1 3 5 5 C 1.53114 * 109.16584 * 182.40729 * 4 2 1 6 6 C 1.53036 * 109.27864 * 57.65433 * 5 4 2 7 7 N 1.46846 * 109.52186 * 300.82073 * 6 5 4 8 8 C 1.46906 * 110.99924 * 185.83539 * 7 6 5 9 9 C 1.50693 * 109.47303 * 293.96170 * 8 7 6 10 10 H 1.08001 * 120.00290 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99989 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99808 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99906 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47315 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46971 * 120.00123 * 13 11 9 16 16 H 1.48500 * 109.46902 * 239.99772 * 13 11 9 17 17 C 1.46853 * 111.23278 * 61.72524 * 7 6 5 18 18 H 1.09002 * 109.47153 * 59.99953 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00144 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 1.00903 * 110.99825 * 299.99695 * 3 2 1 22 22 H 1.00899 * 111.00200 * 63.95509 * 3 2 1 23 23 H 1.09001 * 109.52386 * 302.31431 * 4 2 1 24 24 H 1.09004 * 109.51727 * 62.49981 * 4 2 1 25 25 H 1.08994 * 109.50417 * 177.60113 * 5 4 2 26 26 H 1.09007 * 109.50301 * 297.67561 * 5 4 2 27 27 H 1.08997 * 109.46093 * 60.84155 * 6 5 4 28 28 H 1.08995 * 109.46052 * 180.81877 * 6 5 4 29 29 H 1.09006 * 109.46673 * 53.96167 * 8 7 6 30 30 H 1.08999 * 109.46914 * 173.95407 * 8 7 6 31 31 H 0.96997 * 119.99835 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.49857 * 178.27583 * 17 7 6 33 33 H 1.09005 * 109.42658 * 58.30687 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0205 1.3847 0.0000 4 6 2.0413 -0.7235 -1.2489 5 6 3.5712 -0.7717 -1.2110 6 6 4.0229 -1.4731 0.0719 7 7 3.5093 -0.7426 1.2376 8 6 4.0372 -1.3068 2.4870 9 6 3.5010 -2.7027 2.6739 10 1 2.8344 -3.1281 1.9383 11 6 3.8615 -3.4368 3.7839 12 7 4.6737 -2.9190 4.6794 13 14 3.1964 -5.1669 4.0158 14 1 2.3091 -5.5130 2.8764 15 1 4.3268 -6.1283 4.0734 16 1 2.4240 -5.2346 5.2824 17 6 2.0409 -0.7230 1.2483 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.6973 1.8827 -0.8158 22 1 1.7514 1.8636 0.8463 23 1 1.6452 -1.7388 -1.2695 24 1 1.7157 -0.1863 -2.1398 25 1 3.9395 -1.3228 -2.0762 26 1 3.9679 0.2435 -1.2304 27 1 3.6375 -2.4926 0.0834 28 1 5.1120 -1.4962 0.1090 29 1 5.1257 -1.3389 2.4397 30 1 3.7283 -0.6835 3.3262 31 1 4.9276 -3.4356 5.4601 32 1 1.6905 -0.2016 2.1390 33 1 1.6647 -1.7461 1.2550 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885293980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = -9.443476 kcal Electronic energy + Delta-G solvation = -13438.113008 eV Core-core repulsion = 11304.928201 eV Total energy + Delta-G solvation = -2133.184806 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79433 -34.83200 -32.56694 -31.32416 -28.87533 -26.79758 -26.06422 -23.87827 -21.61004 -20.27733 -18.49837 -16.37517 -15.29703 -15.00586 -14.52169 -14.20420 -13.80069 -13.30409 -12.82788 -12.61785 -12.24504 -11.96978 -11.62417 -11.39341 -11.22668 -10.99987 -10.80233 -10.27744 -10.22152 -10.04371 -9.80938 -9.66894 -9.30458 -8.39453 -8.13913 -6.95075 -5.97003 -4.07295 3.27486 3.35547 3.38876 4.43108 4.82414 5.08382 5.22250 5.31514 5.32654 5.60187 5.64373 5.87557 5.88723 6.11722 6.15730 6.23467 6.36774 6.47787 6.55457 6.64535 6.71249 6.85263 7.06809 7.40122 7.59519 7.65081 7.90357 7.96099 8.20897 8.39217 8.49493 9.05441 9.59434 11.06468 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045288 B = 0.010153 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.112474 B = 2757.177359 C = 2847.109382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.115 3.885 3 N -0.817 5.817 4 C -0.102 4.102 5 C -0.109 4.109 6 C 0.067 3.933 7 N -0.523 5.523 8 C 0.186 3.814 9 C -0.547 4.547 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.887 3.113 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.082 3.918 18 H 0.049 0.951 19 H 0.053 0.947 20 H 0.058 0.942 21 H 0.324 0.676 22 H 0.337 0.663 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 4.902 -9.522 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.022 3.978 3 N -0.346 5.346 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.062 4.062 7 N -0.246 5.246 8 C 0.060 3.940 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.715 3.285 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.047 4.047 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.136 0.864 22 H 0.150 0.850 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.353 5.022 -9.400 11.926 hybrid contribution -1.720 -1.705 0.430 2.460 sum -7.074 3.317 -8.969 11.895 Atomic orbital electron populations 1.22618 0.98068 1.02233 1.00965 1.20940 0.90298 0.89858 0.96729 1.58682 1.67419 1.02105 1.06381 1.21537 0.97197 0.99193 0.96054 1.21506 0.94607 1.01739 0.96807 1.21810 0.99143 0.94999 0.90259 1.62297 1.05822 1.52946 1.03568 1.19754 0.95628 0.92514 0.86114 1.21845 1.29058 1.00984 1.06755 0.92589 1.24973 0.94983 0.97980 0.95930 1.69958 1.34490 1.37235 1.11286 0.86627 0.78859 0.85064 0.77995 1.19931 1.20957 1.20992 1.21804 0.90431 0.97820 0.94667 0.93218 0.92815 0.92324 0.86393 0.85004 0.92512 0.93146 0.93445 0.90606 0.95331 0.92123 0.95253 0.95314 0.92945 0.92217 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.77 37.16 0.33 -2.03 16 2 C 0.11 1.79 0.84 -131.52 -0.11 1.68 16 3 N -0.82 -11.74 8.10 0.81 0.01 -11.73 16 4 C -0.10 -1.55 4.96 -26.61 -0.13 -1.68 16 5 C -0.11 -1.81 5.93 -26.65 -0.16 -1.96 16 6 C 0.07 1.37 5.14 -3.83 -0.02 1.35 16 7 N -0.52 -11.64 4.71 -236.11 -1.11 -12.75 16 8 C 0.19 4.94 5.13 -4.98 -0.03 4.91 16 9 C -0.55 -15.34 7.74 -34.44 -0.27 -15.60 16 10 H 0.06 1.56 5.84 -52.49 -0.31 1.26 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 13 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.08 1.64 3.89 -3.83 -0.01 1.63 16 18 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.32 3.89 9.00 -39.29 -0.35 3.54 16 22 H 0.34 4.68 8.99 -39.29 -0.35 4.33 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.30 7.73 -51.92 -0.40 0.90 16 27 H 0.03 0.63 7.03 -51.93 -0.37 0.27 16 28 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 33 H 0.04 0.84 6.57 -51.93 -0.34 0.50 16 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -29.50 259.49 -7.45 -36.95 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.47 Total: 2.81 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.50 Total: -9.99 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.37 Total: -50.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.50 -7.45 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885293980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.506 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds