Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46897 * 109.49622 * 305.06236 * 3 2 1 5 5 C 1.53039 * 109.49871 * 184.99779 * 3 2 1 6 6 C 1.53038 * 109.53752 * 178.68304 * 5 3 2 7 7 C 1.53198 * 109.31330 * 61.36625 * 6 5 3 8 8 N 1.46925 * 108.77140 * 305.36224 * 7 6 5 9 9 C 1.36934 * 120.62856 * 233.58380 * 8 7 6 10 10 H 1.08005 * 120.00232 * 152.33753 * 9 8 7 11 11 C 1.38812 * 120.00282 * 332.33069 * 9 8 7 12 12 N 1.31620 * 119.99999 * 342.64336 * 11 9 8 13 13 Si 1.86800 * 119.99889 * 162.91200 * 11 9 8 14 14 H 1.48506 * 109.47077 * 179.72923 * 13 11 9 15 15 H 1.48495 * 109.47558 * 299.72760 * 13 11 9 16 16 H 1.48496 * 109.46913 * 59.73080 * 13 11 9 17 17 C 1.46921 * 118.73991 * 53.86292 * 8 7 6 18 18 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47699 * 300.00074 * 1 2 3 20 20 H 1.09007 * 109.47274 * 60.00250 * 1 2 3 21 21 H 1.08997 * 109.47699 * 239.99926 * 2 1 3 22 22 H 1.09006 * 109.46756 * 119.99745 * 2 1 3 23 23 H 1.00900 * 110.99945 * 59.93469 * 4 3 2 24 24 H 1.00902 * 111.00000 * 183.89120 * 4 3 2 25 25 H 1.08998 * 109.45936 * 58.65873 * 5 3 2 26 26 H 1.08998 * 109.44623 * 298.69707 * 5 3 2 27 27 H 1.08996 * 109.50154 * 301.41306 * 6 5 3 28 28 H 1.09006 * 109.52513 * 181.33025 * 6 5 3 29 29 H 1.08997 * 109.58492 * 185.57512 * 7 6 5 30 30 H 1.08999 * 109.70353 * 65.21869 * 7 6 5 31 31 H 0.96999 * 119.99715 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.58547 * 65.92317 * 17 8 7 33 33 H 1.09001 * 109.59161 * 186.34516 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4534 2.1699 -1.1335 5 6 3.5652 1.4451 -0.1257 6 6 4.0735 2.8882 -0.1588 7 6 3.6951 3.5889 1.1499 8 7 2.2449 3.4644 1.3506 9 6 1.4735 4.5740 1.5715 10 1 0.4326 4.5741 1.2834 11 6 2.0291 5.6986 2.1660 12 7 3.1669 5.6027 2.8207 13 14 1.1583 7.3466 2.0430 14 1 1.9482 8.3787 2.7615 15 1 1.0250 7.7308 0.6148 16 1 -0.1905 7.2406 2.6551 17 6 1.6392 2.1263 1.3160 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 1.8934 -0.5138 -0.8899 22 1 1.8932 -0.5138 0.8901 23 1 0.4463 2.1821 -1.0730 24 1 1.8235 3.1067 -1.1924 25 1 3.8546 0.9369 -1.0455 26 1 4.0005 0.9262 0.7283 27 1 3.6192 3.4148 -0.9980 28 1 5.1577 2.8900 -0.2721 29 1 3.9669 4.6428 1.0919 30 1 4.2207 3.1212 1.9825 31 1 3.5553 6.3887 3.2357 32 1 2.0006 1.5397 2.1606 33 1 0.5540 2.2149 1.3678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885294005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = 6.564130 kcal Electronic energy + Delta-G solvation = -13681.547100 eV Core-core repulsion = 11549.056435 eV Total energy + Delta-G solvation = -2132.490665 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.61675 -34.53530 -32.21678 -30.43416 -30.04461 -27.54352 -25.29992 -23.42065 -21.87447 -20.16496 -18.06528 -16.79179 -15.52069 -14.90178 -14.50939 -13.92306 -13.43571 -13.00504 -12.91062 -12.54577 -12.40576 -11.93162 -11.50506 -11.29136 -10.99429 -10.88157 -10.59545 -10.40212 -10.31261 -10.11362 -9.89345 -9.43977 -9.36658 -8.52032 -8.00529 -6.63447 -5.79718 -3.23175 3.36567 3.42609 3.43500 4.47528 5.20814 5.26039 5.38130 5.39979 5.57974 5.62496 5.87220 5.90850 5.98801 6.09360 6.23678 6.40840 6.44567 6.50481 6.54482 6.69925 6.71772 6.81698 6.92847 6.98102 7.41000 7.67220 7.76659 7.92215 8.18276 8.43529 9.19768 9.83480 10.40625 11.27644 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.011826 C = 0.010512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.494443 B = 2367.057416 C = 2662.945746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C 0.100 3.900 4 N -0.835 5.835 5 C -0.095 4.095 6 C -0.144 4.144 7 C 0.168 3.832 8 N -0.590 5.590 9 C -0.256 4.256 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.901 5.901 13 Si 0.902 3.098 14 H -0.291 1.291 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.121 3.879 18 H 0.045 0.955 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.328 0.672 24 H 0.348 0.652 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.254 0.746 32 H 0.015 0.985 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -7.362 -5.190 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.005 3.995 4 N -0.366 5.366 5 C -0.133 4.133 6 C -0.183 4.183 7 C 0.042 3.958 8 N -0.313 5.313 9 C -0.386 4.386 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.545 5.545 13 Si 0.732 3.268 14 H -0.216 1.216 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.007 4.007 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.140 0.860 24 H 0.164 0.836 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.139 -7.766 -5.534 9.604 hybrid contribution -0.750 1.532 0.860 1.910 sum -1.889 -6.235 -4.675 8.018 Atomic orbital electron populations 1.21794 0.96451 1.00789 1.01983 1.21481 0.95611 0.96275 1.01084 1.21295 0.94382 0.92564 0.91241 1.59252 1.10258 1.23032 1.44095 1.21399 0.94319 0.97475 1.00130 1.22210 0.98715 0.95952 1.01470 1.20816 0.83627 1.00516 0.90825 1.44064 1.03783 1.00605 1.82855 1.19110 0.94468 0.91319 1.33660 0.91947 1.25040 0.97910 0.99367 0.97198 1.70036 1.20421 1.28636 1.35401 0.86378 0.78869 0.83832 0.77714 1.21638 1.20995 1.20961 1.21801 0.96670 0.87873 0.94347 0.93547 0.92695 0.92309 0.92200 0.92418 0.85955 0.83644 0.93142 0.92828 0.92383 0.93418 0.89595 0.96637 0.93577 0.96677 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.22 37.15 0.34 -1.73 16 2 C -0.11 -1.59 5.16 -26.73 -0.14 -1.73 16 3 C 0.10 1.77 0.71 -131.26 -0.09 1.68 16 4 N -0.84 -14.62 8.72 1.02 0.01 -14.61 16 5 C -0.10 -1.71 4.89 -26.69 -0.13 -1.84 16 6 C -0.14 -2.84 5.76 -26.61 -0.15 -2.99 16 7 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 8 N -0.59 -14.65 2.57 -172.05 -0.44 -15.09 16 9 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 10 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 11 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 12 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 13 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.12 2.57 5.06 -3.49 -0.02 2.55 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 19 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16 20 H 0.06 0.79 6.61 -51.92 -0.34 0.44 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.33 5.44 7.04 -39.29 -0.28 5.16 16 24 H 0.35 6.77 6.55 -39.29 -0.26 6.51 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.16 6.49 -51.93 -0.34 0.82 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 1.09 6.66 -51.93 -0.35 0.74 16 LS Contribution 251.39 15.07 3.79 3.79 Total: -1.00 -28.20 251.39 -6.64 -34.84 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.15 Total: 7.14 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.44 Total: -7.12 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.19 Total: -55.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.20 -6.64 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.404 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds