Wall clock time and date at job start Mon Mar 30 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.36490 * 2 1 4 4 C 1.54380 * 110.41283 * 122.34971 * 2 1 3 5 5 C 1.54262 * 105.05696 * 142.63063 * 4 2 1 6 6 H 1.09003 * 110.32109 * 241.10029 * 5 4 2 7 7 N 1.46900 * 110.31941 * 118.90133 * 5 4 2 8 8 C 1.46903 * 110.99624 * 189.29464 * 7 5 4 9 9 C 1.46896 * 111.00559 * 65.34079 * 7 5 4 10 10 C 1.50696 * 109.47229 * 189.99917 * 9 7 5 11 11 H 1.08002 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99864 * 180.02562 * 10 9 7 13 13 N 1.31520 * 120.00276 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00156 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47181 * 89.99623 * 14 12 10 16 16 H 1.48498 * 109.47229 * 209.99530 * 14 12 10 17 17 H 1.48498 * 109.46685 * 330.00075 * 14 12 10 18 18 C 1.54373 * 105.06166 * 0.02562 * 5 4 2 19 19 N 1.48558 * 104.70001 * 336.08424 * 18 5 4 20 20 H 1.09003 * 109.46597 * 297.65044 * 1 2 3 21 21 H 1.09002 * 109.46955 * 57.64514 * 1 2 3 22 22 H 1.08990 * 109.46891 * 177.64833 * 1 2 3 23 23 H 1.09004 * 110.32059 * 23.73657 * 4 2 1 24 24 H 1.08996 * 110.40879 * 261.57217 * 4 2 1 25 25 H 1.09006 * 109.47340 * 65.44394 * 8 7 5 26 26 H 1.09007 * 109.47017 * 185.43970 * 8 7 5 27 27 H 1.09001 * 109.47185 * 305.43937 * 8 7 5 28 28 H 1.09003 * 109.46949 * 310.00097 * 9 7 5 29 29 H 1.09007 * 109.46988 * 69.99661 * 9 7 5 30 30 H 0.96993 * 120.00060 * 180.02562 * 13 12 10 31 31 H 1.09001 * 110.41642 * 94.92954 * 18 5 4 32 32 H 1.09010 * 110.40869 * 217.25015 * 18 5 4 33 33 H 1.00902 * 111.00099 * 159.09990 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 1.2223 5 6 3.3178 -1.5180 0.7070 6 1 3.1862 -2.5952 0.8094 7 7 4.5124 -1.0771 1.4394 8 6 5.7349 -1.6059 0.8198 9 6 4.4325 -1.4589 2.8556 10 6 5.5425 -0.7856 3.6209 11 1 6.2380 -0.1390 3.1065 12 6 5.6707 -0.9959 4.9774 13 7 4.8240 -1.7837 5.6038 14 14 7.0470 -0.1618 5.9260 15 1 6.5764 1.1549 6.4260 16 1 7.4438 -1.0147 7.0751 17 1 8.2149 0.0374 5.0308 18 6 3.4294 -1.1302 -0.7831 19 7 2.0492 -0.7477 -1.1775 20 1 -0.3632 0.4769 0.9104 21 1 -0.3633 0.5500 -0.8681 22 1 -0.3633 -1.0267 -0.0422 23 1 1.3236 -1.4863 1.5775 24 1 2.3414 -0.0832 2.0198 25 1 5.8546 -1.1742 -0.1740 26 1 6.5961 -1.3455 1.4352 27 1 5.6611 -2.6904 0.7383 28 1 3.4701 -1.1477 3.2621 29 1 4.5326 -2.5406 2.9465 30 1 4.9140 -1.9313 6.5582 31 1 4.1079 -0.2860 -0.9065 32 1 3.7714 -1.9809 -1.3728 33 1 2.0567 -0.1672 -2.0028 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885294088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:34 Heat of formation + Delta-G solvation = 2.310671 kcal Electronic energy + Delta-G solvation = -13072.644730 eV Core-core repulsion = 10939.969622 eV Total energy + Delta-G solvation = -2132.675108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.75777 -35.46306 -32.50873 -30.76547 -29.07749 -27.36833 -24.81303 -24.52569 -21.46430 -20.19046 -18.99300 -16.65913 -16.03807 -15.27253 -14.74543 -14.25131 -13.47447 -13.27730 -12.97743 -12.70345 -12.13168 -11.90321 -11.63317 -11.45889 -11.16697 -11.06829 -10.87869 -10.61705 -10.43198 -10.28355 -10.19658 -9.73681 -9.17786 -8.44333 -8.39038 -7.22876 -6.02187 -4.03510 3.31972 3.37843 3.41370 4.36388 4.46734 4.97279 5.07730 5.20138 5.33294 5.42141 5.60278 5.72638 5.83073 5.96915 6.04282 6.13374 6.15453 6.23619 6.36174 6.42531 6.53741 6.63764 6.77059 6.98078 7.33009 7.36715 7.50047 7.81907 8.11887 8.21757 8.57339 9.04259 9.60493 11.08654 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051264 B = 0.008510 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.063342 B = 3289.524465 C = 3578.415349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.063 3.937 3 H 0.049 0.951 4 C -0.111 4.111 5 C 0.080 3.920 6 H 0.038 0.962 7 N -0.536 5.536 8 C 0.035 3.965 9 C 0.191 3.809 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.044 3.956 19 N -0.665 5.665 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.010 0.990 28 H 0.034 0.966 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 2.290 -10.403 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.149 4.149 5 C -0.030 4.030 6 H 0.056 0.944 7 N -0.261 5.261 8 C -0.114 4.114 9 C 0.066 3.934 10 C -0.546 4.546 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.086 4.086 19 N -0.294 5.294 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.855 2.064 -10.116 11.408 hybrid contribution 1.211 0.327 0.626 1.402 sum -3.643 2.391 -9.489 10.442 Atomic orbital electron populations 1.21700 0.94452 1.02149 1.00966 1.22502 0.95232 0.95838 0.91132 0.93319 1.22413 0.96045 0.99388 0.97063 1.22259 0.91882 0.96738 0.92097 0.94396 1.62303 0.99781 1.59093 1.04956 1.22233 0.94811 0.95971 0.98380 1.19747 0.98142 0.94135 0.81372 1.21170 1.12900 1.27903 0.92657 0.91915 1.24993 0.96491 0.95445 0.97709 1.69962 1.36799 1.37418 1.09596 0.86505 0.82213 0.79291 0.79431 1.20649 1.21315 1.19893 1.22952 0.89690 1.00043 0.95921 1.63751 1.18926 1.41748 1.04957 0.92344 0.93292 0.92030 0.91679 0.89630 0.93638 0.90557 0.97176 0.94839 0.99281 0.92939 0.93144 0.91074 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.06 0.92 3.80 -65.92 -0.25 0.67 16 3 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.97 5.58 -25.35 -0.14 -2.12 16 5 C 0.08 1.52 2.78 -66.33 -0.18 1.33 16 6 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 7 N -0.54 -11.79 4.52 -234.66 -1.06 -12.85 16 8 C 0.03 0.69 9.01 60.07 0.54 1.23 16 9 C 0.19 5.04 4.52 -4.98 -0.02 5.02 16 10 C -0.51 -14.37 8.38 -34.44 -0.29 -14.65 16 11 H 0.06 1.76 7.17 -52.49 -0.38 1.38 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.04 0.68 5.92 -2.19 -0.01 0.67 16 19 N -0.67 -9.46 7.30 -102.55 -0.75 -10.21 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.13 7.86 -51.93 -0.41 0.72 16 24 H 0.09 1.71 6.90 -51.93 -0.36 1.35 16 25 H 0.04 0.77 6.83 -51.93 -0.35 0.42 16 26 H 0.08 1.63 6.66 -51.93 -0.35 1.28 16 27 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 28 H 0.03 0.93 6.50 -51.93 -0.34 0.59 16 29 H -0.01 -0.30 8.12 -51.92 -0.42 -0.73 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 0.80 7.39 -51.93 -0.38 0.42 16 32 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.33 3.93 8.93 -39.29 -0.35 3.58 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -29.60 262.52 -7.67 -37.28 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.43 Total: -1.08 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.10 Total: -7.70 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -1.07 Total: -49.16 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.60 -7.67 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.588 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds