Wall clock time and date at job start Mon Mar 30 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.36490 * 2 1 4 4 C 1.54380 * 110.41283 * 122.34971 * 2 1 3 5 5 C 1.54262 * 105.05696 * 142.63063 * 4 2 1 6 6 H 1.09003 * 110.32109 * 241.10029 * 5 4 2 7 7 N 1.46900 * 110.31941 * 118.90133 * 5 4 2 8 8 C 1.46903 * 110.99624 * 189.29464 * 7 5 4 9 9 C 1.46896 * 111.00559 * 65.34079 * 7 5 4 10 10 C 1.50696 * 109.47229 * 189.99917 * 9 7 5 11 11 H 1.08002 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99864 * 180.02562 * 10 9 7 13 13 N 1.31520 * 120.00276 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00156 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47181 * 89.99623 * 14 12 10 16 16 H 1.48498 * 109.47229 * 209.99530 * 14 12 10 17 17 H 1.48498 * 109.46685 * 330.00075 * 14 12 10 18 18 C 1.54373 * 105.06166 * 0.02562 * 5 4 2 19 19 N 1.48558 * 104.70001 * 336.08424 * 18 5 4 20 20 H 1.09003 * 109.46597 * 297.65044 * 1 2 3 21 21 H 1.09002 * 109.46955 * 57.64514 * 1 2 3 22 22 H 1.08990 * 109.46891 * 177.64833 * 1 2 3 23 23 H 1.09004 * 110.32059 * 23.73657 * 4 2 1 24 24 H 1.08996 * 110.40879 * 261.57217 * 4 2 1 25 25 H 1.09006 * 109.47340 * 65.44394 * 8 7 5 26 26 H 1.09007 * 109.47017 * 185.43970 * 8 7 5 27 27 H 1.09001 * 109.47185 * 305.43937 * 8 7 5 28 28 H 1.09003 * 109.46949 * 310.00097 * 9 7 5 29 29 H 1.09007 * 109.46988 * 69.99661 * 9 7 5 30 30 H 0.96993 * 120.00060 * 180.02562 * 13 12 10 31 31 H 1.09001 * 110.41642 * 94.92954 * 18 5 4 32 32 H 1.09010 * 110.40869 * 217.25015 * 18 5 4 33 33 H 1.00902 * 111.00099 * 159.09990 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 1.2223 5 6 3.3178 -1.5180 0.7070 6 1 3.1862 -2.5952 0.8094 7 7 4.5124 -1.0771 1.4394 8 6 5.7349 -1.6059 0.8198 9 6 4.4325 -1.4589 2.8556 10 6 5.5425 -0.7856 3.6209 11 1 6.2380 -0.1390 3.1065 12 6 5.6707 -0.9959 4.9774 13 7 4.8240 -1.7837 5.6038 14 14 7.0470 -0.1618 5.9260 15 1 6.5764 1.1549 6.4260 16 1 7.4438 -1.0147 7.0751 17 1 8.2149 0.0374 5.0308 18 6 3.4294 -1.1302 -0.7831 19 7 2.0492 -0.7477 -1.1775 20 1 -0.3632 0.4769 0.9104 21 1 -0.3633 0.5500 -0.8681 22 1 -0.3633 -1.0267 -0.0422 23 1 1.3236 -1.4863 1.5775 24 1 2.3414 -0.0832 2.0198 25 1 5.8546 -1.1742 -0.1740 26 1 6.5961 -1.3455 1.4352 27 1 5.6611 -2.6904 0.7383 28 1 3.4701 -1.1477 3.2621 29 1 4.5326 -2.5406 2.9465 30 1 4.9140 -1.9313 6.5582 31 1 4.1079 -0.2860 -0.9065 32 1 3.7714 -1.9809 -1.3728 33 1 2.0567 -0.1672 -2.0028 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885294088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:34 Heat of formation + Delta-G solvation = -19.797722 kcal Electronic energy + Delta-G solvation = -13073.603422 eV Core-core repulsion = 10939.969622 eV Total energy + Delta-G solvation = -2133.633800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19019 -37.10645 -34.61658 -31.99601 -30.58353 -29.28763 -26.42338 -26.06195 -23.34430 -21.46642 -20.53821 -18.58776 -17.67765 -16.79482 -16.58302 -15.69226 -15.08831 -14.98118 -14.56845 -13.95019 -13.86073 -13.50069 -13.17399 -12.85979 -12.80174 -12.59591 -12.52004 -12.44107 -12.18079 -11.76423 -11.62785 -11.57062 -11.23477 -10.62014 -9.57101 -9.05990 -8.21609 -6.32077 1.40253 1.41906 1.53001 2.39053 3.07932 3.12496 3.49990 3.72963 3.84355 4.13315 4.30383 4.44617 4.53232 4.58076 4.69844 4.83458 4.84139 4.92332 5.00373 5.06181 5.11842 5.16748 5.20631 5.29724 5.38041 5.62099 5.74922 6.05901 6.28634 6.49048 6.64166 6.84267 7.37596 8.89640 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051264 B = 0.008510 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.063342 B = 3289.524465 C = 3578.415349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 H 0.051 0.949 4 C -0.113 4.113 5 C 0.072 3.928 6 H 0.022 0.978 7 N -0.540 5.540 8 C 0.037 3.963 9 C 0.208 3.792 10 C -0.525 4.525 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.971 3.029 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.263 1.263 18 C 0.055 3.945 19 N -0.661 5.661 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.010 0.990 28 H 0.010 0.990 29 H -0.045 1.045 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 3.368 -11.757 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.041 4.041 3 H 0.069 0.931 4 C -0.151 4.151 5 C -0.038 4.038 6 H 0.040 0.960 7 N -0.265 5.265 8 C -0.112 4.112 9 C 0.082 3.918 10 C -0.563 4.563 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.795 3.205 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.074 4.074 19 N -0.291 5.291 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.028 0.972 29 H -0.027 1.027 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.504 3.152 -11.508 12.754 hybrid contribution 1.062 -0.041 1.017 1.471 sum -3.443 3.111 -10.491 11.471 Atomic orbital electron populations 1.21656 0.92455 1.02339 1.02244 1.22454 0.96766 0.95219 0.89637 0.93069 1.22388 0.95795 0.99024 0.97938 1.22401 0.91058 0.95939 0.94379 0.96035 1.62252 1.01821 1.59293 1.03128 1.22256 0.93084 0.96243 0.99571 1.19378 0.96527 0.91663 0.84275 1.21477 1.13398 1.28100 0.93365 0.91812 1.25943 0.99089 0.95952 0.98760 1.70095 1.38647 1.38701 1.10058 0.85359 0.79005 0.78219 0.77886 1.19823 1.20747 1.18761 1.22818 0.90747 1.00699 0.93166 1.63732 1.17723 1.42283 1.05386 0.91974 0.91059 0.92462 0.92008 0.92455 0.89992 0.92342 0.97122 0.97224 1.02743 0.92677 0.92813 0.89588 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.48 71.98 0.68 -2.24 16 2 C 0.07 1.91 3.80 45.01 0.17 2.08 16 3 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -4.08 5.58 31.49 0.18 -3.90 16 5 C 0.07 2.72 2.78 45.81 0.13 2.85 16 6 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 7 N -0.54 -24.02 4.52 -896.32 -4.05 -28.07 16 8 C 0.04 1.44 9.01 127.69 1.15 2.59 16 9 C 0.21 11.41 4.52 85.56 0.39 11.80 16 10 C -0.53 -30.28 8.38 25.60 0.21 -30.07 16 11 H 0.06 3.59 7.17 -2.91 -0.02 3.57 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 14 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.06 1.62 5.92 86.45 0.51 2.13 16 19 N -0.66 -17.02 7.30 -478.36 -3.49 -20.51 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 2.21 7.86 -2.38 -0.02 2.19 16 24 H 0.06 2.38 6.90 -2.39 -0.02 2.36 16 25 H 0.08 2.60 6.83 -2.38 -0.02 2.58 16 26 H 0.06 2.48 6.66 -2.38 -0.02 2.47 16 27 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 28 H 0.01 0.57 6.50 -2.39 -0.02 0.55 16 29 H -0.05 -2.72 8.12 -2.38 -0.02 -2.74 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.05 1.55 7.39 -2.39 -0.02 1.54 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.35 7.05 8.93 -89.69 -0.80 6.25 16 Total: -1.00 -64.16 262.52 -1.08 -65.24 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.27 Total: 7.76 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.88 Total: -14.28 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -7.26 Total: -105.38 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.16 -1.08 -65.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.441 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds