Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 120.00283 * 2 1 4 4 H 1.48487 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46977 * 300.00385 * 3 2 1 6 6 H 1.48502 * 109.46812 * 59.99840 * 3 2 1 7 7 C 1.38946 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00024 * 169.90472 * 7 2 1 9 9 N 1.37100 * 120.00064 * 349.90321 * 7 2 1 10 10 C 1.34426 * 124.34770 * 151.92897 * 9 7 2 11 11 O 1.21293 * 124.94339 * 359.56326 * 10 9 7 12 12 C 1.51279 * 110.11307 * 179.59015 * 10 9 7 13 13 C 1.54631 * 104.19706 * 343.75226 * 12 10 9 14 14 C 1.46761 * 124.35007 * 331.93261 * 9 7 2 15 15 H 1.08993 * 110.24811 * 78.01467 * 14 9 7 16 16 C 1.50706 * 110.31603 * 316.05150 * 14 9 7 17 17 O 1.20824 * 120.00039 * 342.68227 * 16 14 9 18 18 O 1.34228 * 119.99175 * 162.67889 * 16 14 9 19 19 H 0.96998 * 119.99797 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.48613 * 225.07142 * 12 10 9 21 21 H 1.09008 * 110.59486 * 102.48450 * 12 10 9 22 22 H 1.08993 * 110.96684 * 266.67814 * 13 12 10 23 23 H 1.09000 * 111.00121 * 142.92869 * 13 12 10 24 24 H 0.96702 * 116.99422 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0764 -1.2105 -0.1645 9 7 1.3393 -2.3815 0.2071 10 6 1.7311 -3.5723 -0.2783 11 8 2.7156 -3.7535 -0.9631 12 6 0.7649 -4.6534 0.1533 13 6 -0.0324 -4.0093 1.3111 14 6 0.1026 -2.5048 0.9877 15 1 -0.7503 -2.1674 0.3990 16 6 0.2057 -1.7050 2.2609 17 8 1.2871 -1.3472 2.6637 18 8 -0.9041 -1.3902 2.9472 19 1 -0.4850 0.8400 0.0004 20 1 1.3070 -5.5311 0.5054 21 1 0.0982 -4.9214 -0.6664 22 1 0.4207 -4.2435 2.2743 23 1 -1.0766 -4.3212 1.2872 24 1 -0.7878 -0.8756 3.7576 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034060654.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -119.140540 kcal Electronic energy + Delta-G solvation = -13282.417193 eV Core-core repulsion = 10775.090714 eV Total energy + Delta-G solvation = -2507.326479 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 199.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.97812 -38.35274 -35.43030 -34.81923 -33.16552 -30.46209 -27.67739 -25.03185 -22.47084 -20.52664 -19.30492 -17.30776 -17.12273 -15.93474 -15.28603 -14.87548 -14.50784 -14.09965 -13.61291 -12.69170 -12.62023 -12.32948 -12.02694 -11.54525 -11.22569 -11.08112 -10.62862 -10.49352 -10.39691 -10.29433 -9.52610 -9.19764 -8.52289 -7.79507 -6.41052 -3.98568 3.12652 3.23652 3.26775 3.33035 3.65552 3.92276 4.17864 4.83046 5.05423 5.18323 5.28219 5.47973 5.79860 6.09877 6.24526 6.30049 6.41938 6.72247 7.33308 7.49414 7.89798 8.35175 8.87266 8.99836 9.22034 9.88431 10.66883 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.019370 C = 0.013816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.418590 B = 1445.156637 C = 2026.209502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.032 3.968 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.281 4.281 8 H 0.099 0.901 9 N -0.429 5.429 10 C 0.463 3.537 11 O -0.574 6.574 12 C -0.148 4.148 13 C -0.127 4.127 14 C 0.158 3.842 15 H 0.124 0.876 16 C 0.492 3.508 17 O -0.502 6.502 18 O -0.524 6.524 19 H 0.270 0.730 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -3.508 4.800 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.408 4.408 8 H 0.116 0.884 9 N -0.150 5.150 10 C 0.251 3.749 11 O -0.458 6.458 12 C -0.189 4.189 13 C -0.165 4.165 14 C 0.052 3.948 15 H 0.142 0.858 16 C 0.333 3.667 17 O -0.388 6.388 18 O -0.335 6.335 19 H 0.080 0.920 20 H 0.106 0.894 21 H 0.112 0.888 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.528 -3.498 4.201 7.098 hybrid contribution 0.264 1.433 0.689 1.612 sum -4.264 -2.064 4.890 6.809 Atomic orbital electron populations 1.69799 1.05813 1.27934 1.49576 1.25322 0.95642 0.99879 0.96165 0.85780 0.79984 0.81007 0.77535 1.19128 1.20700 1.20720 1.19467 0.93043 0.81838 1.46436 0.88373 1.43598 1.21925 1.07240 1.42220 1.20308 0.87158 0.84364 0.83098 1.90554 1.29220 1.83668 1.42314 1.22236 0.98879 0.98923 0.98842 1.22652 1.01587 0.93290 0.99007 1.21019 0.93272 0.91983 0.88570 0.85832 1.23435 0.81056 0.77828 0.84370 1.90640 1.29493 1.51246 1.67398 1.84545 1.39298 1.69547 1.40066 0.91974 0.89396 0.88794 0.90799 0.89160 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 10.53 55.50 0.58 -23.19 14 2 C 0.03 0.87 4.47 -17.47 -0.08 0.79 14 3 Si 0.93 21.88 29.56 -169.99 -5.03 16.85 14 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 14 7 C -0.28 -8.04 8.31 -14.93 -0.12 -8.17 14 8 H 0.10 2.94 7.85 -52.48 -0.41 2.53 14 9 N -0.43 -11.23 2.73 -107.81 -0.29 -11.53 14 10 C 0.46 11.54 7.97 -10.86 -0.09 11.46 14 11 O -0.57 -16.34 17.69 5.55 0.10 -16.24 14 12 C -0.15 -2.65 6.86 -26.74 -0.18 -2.83 14 13 C -0.13 -2.12 6.67 -25.10 -0.17 -2.28 14 14 C 0.16 3.48 2.71 -68.16 -0.18 3.30 14 15 H 0.12 2.82 7.19 -51.93 -0.37 2.45 14 16 C 0.49 10.98 5.74 36.01 0.21 11.19 14 17 O -0.50 -12.85 15.86 -18.75 -0.30 -13.14 14 18 O -0.52 -9.48 13.42 -39.25 -0.53 -10.01 14 19 H 0.27 6.88 8.31 -40.82 -0.34 6.54 14 20 H 0.09 1.39 8.14 -51.93 -0.42 0.96 14 21 H 0.09 1.47 8.14 -51.92 -0.42 1.05 14 22 H 0.07 1.17 7.91 -51.93 -0.41 0.76 14 23 H 0.09 1.18 8.14 -51.93 -0.42 0.75 14 24 H 0.39 5.35 9.10 45.56 0.41 5.76 14 LS Contribution 218.64 15.07 3.29 3.29 Total: -1.00 -33.83 218.64 -3.97 -37.80 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -1.18 Total: 2.72 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -0.62 Total: 13.45 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.29 Total: -34.72 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.73 Total: -39.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.83 -3.97 -37.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034060654.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.344 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds