Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47595 * 2 1 4 4 C 1.36929 * 120.00331 * 265.97725 * 3 2 1 5 5 H 1.08003 * 120.00520 * 146.06940 * 4 3 2 6 6 C 1.38810 * 120.00056 * 326.07625 * 4 3 2 7 7 N 1.31621 * 120.00059 * 337.70219 * 6 4 3 8 8 Si 1.86803 * 120.00207 * 157.70478 * 6 4 3 9 9 H 1.48502 * 109.46875 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47091 * 119.99817 * 8 6 4 11 11 H 1.48504 * 109.47030 * 239.99837 * 8 6 4 12 12 C 1.46501 * 119.99747 * 85.70087 * 3 2 1 13 13 H 1.09000 * 109.50153 * 0.02562 * 12 3 2 14 14 C 1.53114 * 109.50429 * 239.92367 * 12 3 2 15 15 C 1.53122 * 109.16053 * 182.40506 * 14 12 3 16 16 C 1.53033 * 109.28043 * 57.65441 * 15 14 12 17 17 N 1.46845 * 109.52449 * 300.82363 * 16 15 14 18 18 C 1.46846 * 111.23627 * 61.71722 * 17 16 15 19 19 H 1.08997 * 109.47261 * 59.99579 * 1 2 3 20 20 H 1.09003 * 109.47339 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46675 * 299.99697 * 1 2 3 22 22 H 1.09006 * 109.46687 * 239.99772 * 2 1 3 23 23 H 1.09005 * 109.47052 * 120.00546 * 2 1 3 24 24 H 0.96995 * 120.00194 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.52578 * 302.31278 * 14 12 3 26 26 H 1.09003 * 109.52557 * 62.50605 * 14 12 3 27 27 H 1.09002 * 109.50104 * 177.59478 * 15 14 12 28 28 H 1.09004 * 109.50345 * 297.67030 * 15 14 12 29 29 H 1.09007 * 109.46204 * 60.83476 * 16 15 14 30 30 H 1.08994 * 109.46579 * 180.81414 * 16 15 14 31 31 H 1.00901 * 111.00279 * 185.84068 * 17 16 15 32 32 H 1.08997 * 109.50136 * 178.28535 * 18 17 16 33 33 H 1.09003 * 109.42776 * 58.31164 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3252 1.9989 -1.1829 5 1 2.1536 3.0589 -1.2990 6 6 2.8566 1.2629 -2.2330 7 7 3.4680 0.1221 -1.9939 8 14 2.7039 1.8914 -3.9855 9 1 1.9780 3.1868 -3.9852 10 1 4.0588 2.0827 -4.5624 11 1 1.9532 0.9038 -4.8018 12 6 2.1730 2.1034 1.2652 13 1 1.8788 1.4565 2.0917 14 6 1.2871 3.3522 1.2525 15 6 1.4999 4.1326 2.5526 16 6 2.9809 4.4928 2.6892 17 7 3.7860 3.2647 2.6971 18 6 3.6348 2.5216 1.4396 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.8397 -0.3920 -2.7276 25 1 1.5549 3.9802 0.4027 26 1 0.2412 3.0561 1.1724 27 1 0.9039 5.0450 2.5310 28 1 1.1944 3.5184 3.3998 29 1 3.2814 5.1186 1.8488 30 1 3.1382 5.0359 3.6210 31 1 4.7566 3.4698 2.8814 32 1 4.2662 1.6334 1.4637 33 1 3.9328 3.1564 0.6051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082500843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -7.474229 kcal Electronic energy + Delta-G solvation = -13538.128082 eV Core-core repulsion = 11405.028669 eV Total energy + Delta-G solvation = -2133.099414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71700 -36.95718 -33.54467 -32.60834 -31.79255 -29.22893 -26.16637 -24.43317 -23.65748 -21.95894 -20.66425 -18.27145 -17.49750 -16.57769 -15.92862 -15.54821 -15.24356 -14.73755 -14.48449 -14.37053 -13.87644 -13.47180 -13.22131 -13.15744 -12.81095 -12.47863 -12.26159 -12.11769 -11.90327 -11.71996 -11.33009 -11.26436 -11.08521 -10.46176 -9.34808 -8.56331 -7.80009 -5.36611 1.42611 1.46511 1.55606 2.50903 3.25754 3.26410 3.81061 4.11497 4.18323 4.24800 4.47351 4.57809 4.65082 4.75583 4.87128 4.92221 4.93312 4.99859 5.10378 5.13024 5.18019 5.22485 5.51457 5.54805 5.59067 5.71190 5.88978 6.12116 6.49383 6.58193 7.20122 7.92212 8.42760 9.17171 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.012562 C = 0.011198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.364474 B = 2228.328445 C = 2499.842812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 N -0.595 5.595 4 C -0.246 4.246 5 H 0.054 0.946 6 C -0.043 4.043 7 N -0.919 5.919 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.289 1.289 12 C 0.176 3.824 13 H 0.054 0.946 14 C -0.119 4.119 15 C -0.108 4.108 16 C 0.058 3.942 17 N -0.690 5.690 18 C 0.070 3.930 19 H 0.033 0.967 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.020 0.980 24 H 0.250 0.750 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.018 0.982 30 H 0.097 0.903 31 H 0.345 0.655 32 H 0.043 0.957 33 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 5.953 7.558 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.316 5.316 4 C -0.377 4.377 5 H 0.071 0.929 6 C -0.239 4.239 7 N -0.565 5.565 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.220 1.220 11 H -0.216 1.216 12 C 0.069 3.931 13 H 0.072 0.928 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.071 4.071 17 N -0.322 5.322 18 C -0.061 4.061 19 H 0.052 0.948 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.115 0.885 31 H 0.163 0.837 32 H 0.061 0.939 33 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -3.364 5.474 7.783 10.093 hybrid contribution 0.754 0.489 -1.882 2.086 sum -2.610 5.963 5.901 8.786 Atomic orbital electron populations 1.22137 0.98283 1.00133 1.00156 1.20928 0.91889 0.86005 1.00300 1.44147 1.74392 1.11669 1.01408 1.19123 1.34240 0.93688 0.90655 0.92880 1.25695 0.97683 0.98443 1.02070 1.70122 1.38120 1.17181 1.31044 0.85466 0.76983 0.78028 0.81541 1.19505 1.22041 1.21596 1.20456 0.92287 0.92846 0.87557 0.92788 1.21881 0.99264 0.97323 0.97405 1.21559 0.95832 1.00239 0.97019 1.21983 0.93893 0.90360 1.00834 1.60348 1.14215 1.23203 1.34401 1.22079 0.98956 0.96202 0.88864 0.94776 0.92435 0.93619 0.91344 0.96131 0.94115 0.94297 0.92953 0.89996 0.91167 0.96343 0.88489 0.83694 0.93887 0.97407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 10.24 71.98 0.74 -5.24 16 2 C 0.13 6.52 5.92 86.38 0.51 7.03 16 3 N -0.60 -29.78 2.40 -677.74 -1.62 -31.40 16 4 C -0.25 -13.45 8.24 84.03 0.69 -12.76 16 5 H 0.05 2.93 6.77 -2.91 -0.02 2.91 16 6 C -0.04 -2.37 4.93 84.86 0.42 -1.95 16 7 N -0.92 -53.94 11.32 21.65 0.25 -53.69 16 8 Si 0.95 45.04 29.61 68.60 2.03 47.07 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.18 7.51 2.80 45.04 0.13 7.63 16 13 H 0.05 2.29 7.85 -2.39 -0.02 2.27 16 14 C -0.12 -4.44 5.29 30.67 0.16 -4.28 16 15 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 16 C 0.06 1.62 6.55 86.32 0.57 2.18 16 17 N -0.69 -22.18 6.84 -514.01 -3.52 -25.69 16 18 C 0.07 2.92 5.82 86.33 0.50 3.42 16 19 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.07 3.78 5.32 -2.38 -0.01 3.77 16 23 H 0.02 0.96 8.01 -2.38 -0.02 0.94 16 24 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.04 1.59 6.87 -2.39 -0.02 1.57 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.35 9.60 8.90 -89.69 -0.80 8.80 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.01 0.36 7.64 -2.39 -0.02 0.34 16 Total: -1.00 -60.24 260.32 1.31 -58.93 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.27 Total: 11.62 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.90 Total: -6.84 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.90 Total: -110.79 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -60.24 1.31 -58.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.459 kcal (2) G-P(sol) polarization free energy of solvation -60.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds