Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46990 * 2 1 4 4 C 1.46897 * 111.00229 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.52097 * 34.92122 * 4 3 2 6 6 C 1.53039 * 109.49844 * 154.99759 * 4 3 2 7 7 C 1.53046 * 109.53621 * 181.32030 * 6 4 3 8 8 C 1.53186 * 109.31235 * 298.63449 * 7 6 4 9 9 N 1.46927 * 108.77731 * 54.63709 * 8 7 6 10 10 C 1.36932 * 120.63177 * 126.41349 * 9 8 7 11 11 H 1.08004 * 120.00038 * 207.66728 * 10 9 8 12 12 C 1.38814 * 119.99982 * 27.66313 * 10 9 8 13 13 N 1.31612 * 120.00200 * 17.37133 * 12 10 9 14 14 Si 1.86798 * 119.99944 * 197.36766 * 12 10 9 15 15 H 1.48503 * 109.47280 * 59.99851 * 14 12 10 16 16 H 1.48501 * 109.47190 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47276 * 300.00228 * 14 12 10 18 18 C 1.46931 * 118.73618 * 306.39136 * 9 8 7 19 19 H 1.09003 * 109.46850 * 60.00564 * 1 2 3 20 20 H 1.08994 * 109.46634 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47424 * 299.99992 * 1 2 3 22 22 H 1.08996 * 109.47424 * 240.00008 * 2 1 3 23 23 H 1.09003 * 109.46850 * 119.99435 * 2 1 3 24 24 H 1.00901 * 111.00049 * 303.95100 * 3 2 1 25 25 H 1.09001 * 109.46124 * 61.29873 * 6 4 3 26 26 H 1.09004 * 109.46045 * 301.33581 * 6 4 3 27 27 H 1.09002 * 109.49865 * 58.58919 * 7 6 4 28 28 H 1.09002 * 109.49442 * 178.68725 * 7 6 4 29 29 H 1.08996 * 109.58858 * 174.42315 * 8 7 6 30 30 H 1.09002 * 109.58973 * 294.85305 * 8 7 6 31 31 H 0.96996 * 120.00390 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.58954 * 293.81785 * 18 9 8 33 33 H 1.08998 * 109.69942 * 173.46367 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4243 0.0006 5 1 3.8750 0.5918 -0.5872 6 6 3.9641 2.7448 -0.6091 7 6 5.4940 2.7727 -0.6391 8 6 6.0305 2.6802 0.7928 9 7 5.4612 1.4876 1.4349 10 6 6.2752 0.5536 2.0183 11 1 5.9556 -0.4760 2.0833 12 6 7.5110 0.9302 2.5261 13 7 7.7659 2.1994 2.7634 14 14 8.8122 -0.3645 2.8727 15 1 9.1443 -1.0815 1.6154 16 1 10.0330 0.2912 3.4065 17 1 8.2934 -1.3325 3.8722 18 6 4.0019 1.3164 1.4397 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3632 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6442 1.9013 -0.7814 25 1 3.5974 3.5760 -0.0067 26 1 3.5793 2.8353 -1.6250 27 1 5.8620 1.9276 -1.2209 28 1 5.8320 3.7035 -1.0947 29 1 7.1173 2.5999 0.7713 30 1 5.7386 3.5700 1.3506 31 1 8.6293 2.4625 3.1186 32 1 3.5446 2.0950 2.0503 33 1 3.7482 0.3373 1.8459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108019897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -9.834518 kcal Electronic energy + Delta-G solvation = -13194.018150 eV Core-core repulsion = 11060.816387 eV Total energy + Delta-G solvation = -2133.201763 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64259 -36.82593 -34.56112 -32.34149 -31.75898 -28.45118 -27.22384 -24.05312 -23.35366 -22.38333 -20.68892 -18.70797 -17.05403 -16.46296 -16.03886 -15.81740 -15.42763 -14.89658 -14.78907 -14.25211 -13.78708 -13.54593 -13.04471 -12.84643 -12.79186 -12.54044 -12.31440 -12.22230 -12.00182 -11.83116 -11.67169 -11.33126 -11.08803 -10.56139 -9.36910 -8.69550 -7.89367 -5.35030 1.45079 1.47611 1.54942 2.48975 3.16941 3.25671 3.81577 3.95029 4.10850 4.26595 4.34083 4.41205 4.53850 4.62877 4.72909 4.81178 4.95945 5.00026 5.08015 5.15624 5.20663 5.22169 5.31337 5.39177 5.50068 5.62215 5.73861 6.11795 6.38250 6.60875 7.13038 7.84278 8.36205 9.17191 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044344 B = 0.009665 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.274398 B = 2896.471482 C = 3326.690601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.687 5.687 4 C 0.085 3.915 5 H 0.030 0.970 6 C -0.102 4.102 7 C -0.130 4.130 8 C 0.173 3.827 9 N -0.611 5.611 10 C -0.269 4.269 11 H 0.062 0.938 12 C -0.050 4.050 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.276 1.276 18 C 0.162 3.838 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.348 0.652 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.054 0.946 30 H -0.005 1.005 31 H 0.252 0.748 32 H 0.010 0.990 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -1.758 -8.286 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 N -0.320 5.320 4 C -0.026 4.026 5 H 0.048 0.952 6 C -0.140 4.140 7 C -0.169 4.169 8 C 0.048 3.952 9 N -0.335 5.335 10 C -0.399 4.399 11 H 0.080 0.920 12 C -0.245 4.245 13 N -0.580 5.580 14 Si 0.797 3.203 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.201 1.201 18 C 0.036 3.964 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.167 0.833 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.067 -1.636 -7.527 12.676 hybrid contribution 1.161 -0.723 -0.269 1.394 sum -8.905 -2.359 -7.796 12.069 Atomic orbital electron populations 1.21700 0.93061 1.02450 1.02494 1.21995 0.96942 0.89026 0.99815 1.60385 1.06920 1.14397 1.50343 1.21780 0.87104 0.97115 0.96645 0.95234 1.21520 0.95377 0.96546 1.00553 1.22019 0.95961 1.01164 0.97799 1.20651 0.97788 0.86990 0.89803 1.44318 1.00895 1.23953 1.64381 1.19467 0.99033 0.89523 1.31891 0.91984 1.25815 1.01787 0.98008 0.98899 1.70188 1.22997 1.16733 1.48121 0.85315 0.78379 0.78527 0.78078 1.20323 1.21633 1.20127 1.20839 0.83377 0.97663 0.94501 0.91726 0.91050 0.92471 0.95322 0.92812 0.83253 0.92139 0.90203 0.93186 0.90575 0.92759 0.98657 0.93943 0.97236 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 10.17 71.98 0.73 -1.98 16 2 C 0.05 1.33 6.21 86.30 0.54 1.87 16 3 N -0.69 -19.94 6.31 -491.16 -3.10 -23.04 16 4 C 0.08 3.03 2.64 44.99 0.12 3.15 16 5 H 0.03 1.13 7.80 -2.38 -0.02 1.11 16 6 C -0.10 -3.36 5.17 30.62 0.16 -3.20 16 7 C -0.13 -4.97 6.08 30.67 0.19 -4.78 16 8 C 0.17 8.72 5.31 86.36 0.46 9.18 16 9 N -0.61 -32.59 3.00 -699.11 -2.09 -34.68 16 10 C -0.27 -15.53 9.59 84.03 0.81 -14.72 16 11 H 0.06 3.51 7.89 -2.91 -0.02 3.48 16 12 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 13 N -0.93 -56.83 11.19 21.65 0.24 -56.58 16 14 Si 0.97 45.87 29.59 68.60 2.03 47.90 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.16 7.39 5.98 86.36 0.52 7.91 16 19 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.03 0.72 8.06 -2.39 -0.02 0.70 16 23 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 24 H 0.35 8.33 8.33 -89.69 -0.75 7.59 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 3.06 6.04 -2.39 -0.01 3.04 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.04 1.77 7.41 -2.39 -0.02 1.75 16 Total: -1.00 -64.32 262.10 1.32 -63.00 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.32 Total: 8.42 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 3.93 Total: -5.02 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -4.95 Total: -114.31 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -64.32 1.32 -63.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108019897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.165 kcal (2) G-P(sol) polarization free energy of solvation -64.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds