Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46908 * 109.47013 * 2 1 4 4 C 1.46846 * 110.99948 * 45.79268 * 3 2 1 5 5 C 1.53034 * 109.52678 * 185.83600 * 4 3 2 6 6 C 1.53120 * 109.27640 * 300.82193 * 5 4 3 7 7 C 1.53124 * 109.16226 * 57.65043 * 6 5 4 8 8 N 1.46901 * 109.53365 * 62.30770 * 7 6 5 9 9 C 1.50694 * 109.50559 * 182.40256 * 7 6 5 10 10 H 1.08001 * 119.99984 * 120.14969 * 9 7 6 11 11 C 1.37882 * 119.99894 * 300.15908 * 9 7 6 12 12 N 1.31518 * 119.99990 * 155.10994 * 11 9 7 13 13 Si 1.86796 * 119.99928 * 335.09550 * 11 9 7 14 14 H 1.48499 * 109.47088 * 180.02562 * 13 11 9 15 15 H 1.48492 * 109.47692 * 300.00739 * 13 11 9 16 16 H 1.48503 * 109.46745 * 60.00926 * 13 11 9 17 17 C 1.46851 * 110.99768 * 169.99821 * 3 2 1 18 18 H 1.08997 * 109.46818 * 300.00094 * 1 2 3 19 19 H 1.09001 * 109.46976 * 59.99333 * 1 2 3 20 20 H 1.08994 * 109.46913 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46772 * 240.00660 * 2 1 3 22 22 H 1.08996 * 109.47033 * 120.00197 * 2 1 3 23 23 H 1.09003 * 109.46241 * 305.85553 * 4 3 2 24 24 H 1.09004 * 109.45987 * 65.82783 * 4 3 2 25 25 H 1.09001 * 109.49937 * 60.76030 * 5 4 3 26 26 H 1.08998 * 109.50769 * 180.87621 * 5 4 3 27 27 H 1.08994 * 109.52616 * 297.74488 * 6 5 4 28 28 H 1.09003 * 109.52460 * 177.55339 * 6 5 4 29 29 H 1.00894 * 111.00491 * 52.48211 * 8 7 6 30 30 H 1.00898 * 111.00036 * 176.43944 * 8 7 6 31 31 H 0.97000 * 119.99480 * 354.88642 * 12 11 9 32 32 H 1.09005 * 109.45896 * 54.14575 * 17 3 2 33 33 H 1.08993 * 109.46113 * 294.17965 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2939 2.1998 0.9827 5 6 1.7265 3.6621 0.8542 6 6 3.2355 3.7657 1.0924 7 6 3.9656 2.8705 0.0873 8 7 3.6955 3.3423 -1.2774 9 6 5.4481 2.9208 0.3528 10 1 5.9837 2.0157 0.5986 11 6 6.1207 4.1223 0.2820 12 7 7.2383 4.2909 0.9546 13 14 5.4449 5.5105 -0.7694 14 1 6.3472 6.6862 -0.6765 15 1 5.3584 5.0639 -2.1830 16 1 4.0920 5.8848 -0.2849 17 6 3.4681 1.4312 0.2381 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8899 23 1 0.2223 2.1206 0.7996 24 1 1.5180 1.8419 1.9876 25 1 1.4902 4.0248 -0.1462 26 1 1.1990 4.2641 1.5941 27 1 3.4675 3.4396 2.1062 28 1 3.5552 4.7992 0.9590 29 1 3.8991 4.3264 -1.3668 30 1 4.2128 2.8031 -1.9555 31 1 7.5504 3.5984 1.5579 32 1 3.9756 0.7936 -0.4859 33 1 3.6817 1.0768 1.2464 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144674372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -11.314136 kcal Electronic energy + Delta-G solvation = -13706.403682 eV Core-core repulsion = 11573.137758 eV Total energy + Delta-G solvation = -2133.265924 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31610 -36.85208 -34.29529 -32.99315 -31.11082 -29.21212 -26.55623 -25.41842 -23.31383 -21.70996 -20.22202 -19.33538 -17.16400 -16.97579 -16.04364 -15.79323 -15.36903 -15.12281 -14.54257 -14.30908 -14.11646 -13.67120 -13.21651 -12.82334 -12.70710 -12.57885 -12.23012 -12.08313 -11.92812 -11.65150 -11.49994 -11.05324 -10.68741 -10.60012 -9.34575 -9.04024 -8.66178 -6.46432 1.35692 1.39916 1.63741 2.36933 2.88257 3.12118 3.96477 4.03141 4.10741 4.23631 4.32912 4.43281 4.57298 4.62710 4.65619 4.79442 4.82064 4.94326 5.10594 5.12449 5.16727 5.28495 5.34294 5.43691 5.60561 5.82057 5.93811 6.18429 6.40598 6.46061 6.64676 6.83596 7.30655 8.49005 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055149 B = 0.011980 C = 0.011357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.589822 B = 2336.693565 C = 2464.838259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.058 3.942 5 C -0.107 4.107 6 C -0.114 4.114 7 C 0.218 3.782 8 N -0.816 5.816 9 C -0.642 4.642 10 H 0.015 0.985 11 C -0.008 4.008 12 N -0.923 5.923 13 Si 1.081 2.919 14 H -0.305 1.305 15 H -0.262 1.262 16 H -0.243 1.243 17 C 0.098 3.902 18 H 0.060 0.940 19 H 0.063 0.937 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.019 0.981 23 H 0.100 0.900 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.306 0.694 30 H 0.332 0.668 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -3.691 -2.154 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.251 5.251 4 C -0.069 4.069 5 C -0.145 4.145 6 C -0.153 4.153 7 C 0.126 3.874 8 N -0.352 5.352 9 C -0.682 4.682 10 H 0.033 0.967 11 C -0.209 4.209 12 N -0.557 5.557 13 Si 0.907 3.093 14 H -0.234 1.234 15 H -0.188 1.188 16 H -0.168 1.168 17 C -0.031 4.031 18 H 0.079 0.921 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.037 0.963 23 H 0.118 0.882 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -14.485 -2.210 -2.978 14.952 hybrid contribution 1.970 -1.981 1.753 3.298 sum -12.515 -4.191 -1.225 13.255 Atomic orbital electron populations 1.21857 0.93034 1.02665 1.02556 1.22193 0.97311 0.88904 0.99934 1.61965 1.02871 1.10443 1.49849 1.22180 0.99313 0.93359 0.92077 1.21543 0.94322 0.96193 1.02421 1.21885 0.96159 0.99331 0.97917 1.18565 0.90243 0.91786 0.86782 1.59466 1.64291 1.05541 1.05898 1.22770 0.96261 0.94838 1.54296 0.96677 1.27095 0.94842 1.02166 0.96773 1.70950 1.25497 1.35049 1.24158 0.83816 0.75953 0.73365 0.76215 1.23396 1.18786 1.16848 1.21702 0.87894 0.97063 0.96398 0.92062 0.91764 0.90710 0.91121 0.96316 0.88163 0.96714 0.90782 0.90903 0.94792 0.93480 0.87527 0.85567 0.93549 0.92954 0.97934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.16 71.98 0.66 -2.41 16 2 C 0.04 1.26 5.99 86.30 0.52 1.77 16 3 N -0.53 -18.45 4.66 -896.34 -4.18 -22.62 16 4 C 0.06 1.86 4.85 86.32 0.42 2.28 16 5 C -0.11 -3.72 5.93 30.65 0.18 -3.54 16 6 C -0.11 -5.02 4.60 30.68 0.14 -4.88 16 7 C 0.22 10.20 0.53 2.83 0.00 10.20 16 8 N -0.82 -35.13 7.62 -154.32 -1.18 -36.30 16 9 C -0.64 -36.43 8.54 25.60 0.22 -36.21 16 10 H 0.01 0.94 7.99 -2.91 -0.02 0.92 16 11 C -0.01 -0.45 5.21 84.66 0.44 -0.01 16 12 N -0.92 -57.70 13.70 21.45 0.29 -57.41 16 13 Si 1.08 49.83 23.70 68.60 1.63 51.46 16 14 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 15 H -0.26 -10.92 6.87 99.48 0.68 -10.23 16 16 H -0.24 -10.10 5.50 99.48 0.55 -9.55 16 17 C 0.10 4.19 4.29 86.32 0.37 4.56 16 18 H 0.06 1.24 6.21 -2.39 -0.01 1.23 16 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 23 H 0.10 2.60 5.81 -2.39 -0.01 2.59 16 24 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.07 2.63 7.73 -2.39 -0.02 2.61 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 2.14 4.72 -2.39 -0.01 2.13 16 29 H 0.31 13.04 3.30 -89.70 -0.30 12.75 16 30 H 0.33 14.14 8.98 -89.70 -0.81 13.34 16 31 H 0.26 16.23 8.73 -92.71 -0.81 15.43 16 32 H 0.05 2.27 8.12 -2.38 -0.02 2.25 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -63.43 244.91 -0.71 -64.14 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.23 Total: 28.96 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 2.95 Total: -28.23 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.06 Total: -116.33 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.63 Total: 51.46 kcal Total: -63.43 -0.71 -64.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144674372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.825 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds