Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46951 * 2 1 4 4 C 1.46905 * 110.99729 * 163.42800 * 3 2 1 5 5 C 1.52997 * 109.46882 * 190.00014 * 4 3 2 6 6 N 1.46504 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00145 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99780 * 0.02562 * 7 6 5 9 9 C 1.38802 * 120.00079 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00351 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00139 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47044 * 60.00250 * 11 9 7 13 13 H 1.48505 * 109.47256 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47474 * 300.00292 * 11 9 7 15 15 C 1.46894 * 110.99935 * 287.37812 * 3 2 1 16 16 C 1.52998 * 117.49766 * 138.31776 * 15 3 2 17 17 C 1.53001 * 117.49916 * 69.65889 * 15 3 2 18 18 H 1.09004 * 109.47388 * 73.64648 * 1 2 3 19 19 H 1.09007 * 109.47350 * 193.64486 * 1 2 3 20 20 H 1.09002 * 109.47371 * 313.64274 * 1 2 3 21 21 H 1.09005 * 109.47097 * 240.00057 * 2 1 3 22 22 H 1.08998 * 109.47155 * 120.00510 * 2 1 3 23 23 H 1.08996 * 109.47261 * 70.00021 * 4 3 2 24 24 H 1.08998 * 109.46987 * 309.99984 * 4 3 2 25 25 H 1.08998 * 109.47285 * 299.99788 * 5 4 3 26 26 H 1.08996 * 109.47167 * 59.99949 * 5 4 3 27 27 H 0.97003 * 119.99819 * 0.02562 * 6 5 4 28 28 H 0.96992 * 120.00120 * 179.97438 * 10 9 7 29 29 H 1.09002 * 115.55651 * 283.98517 * 15 3 2 30 30 H 1.09008 * 117.49793 * 359.97438 * 16 15 3 31 31 H 1.09007 * 117.50508 * 145.01987 * 16 15 3 32 32 H 1.09001 * 117.49643 * 214.97862 * 17 15 3 33 33 H 1.08998 * 117.49625 * 359.97319 * 17 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4344 1.4432 0.3912 5 6 3.8402 2.9002 0.6219 6 7 5.2510 2.9582 1.0126 7 6 5.8404 4.1666 1.2725 8 1 5.2651 5.0768 1.1899 9 6 7.1772 4.2215 1.6422 10 7 7.8785 3.1122 1.7424 11 14 7.9810 5.8699 1.9974 12 1 7.2710 6.5353 3.1192 13 1 9.4033 5.6574 2.3678 14 1 7.9079 6.7274 0.7873 15 6 1.8089 2.0178 -1.3088 16 6 1.3131 3.4652 -1.3220 17 6 0.3681 2.3285 -1.7195 18 1 -0.3634 0.2894 -0.9861 19 1 -0.3634 -0.9987 0.2424 20 1 -0.3634 0.7093 0.7437 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 4.0484 1.0161 -0.4017 24 1 3.5809 0.8753 1.3100 25 1 3.6937 3.4680 -0.2969 26 1 3.2262 3.3272 1.4147 27 1 5.7678 2.1406 1.0864 28 1 8.8127 3.1507 2.0003 29 1 2.5021 1.7162 -2.0940 30 1 1.1430 3.9477 -0.3594 31 1 1.6799 4.1157 -2.1161 32 1 0.1136 2.2316 -2.7749 33 1 -0.4233 2.0630 -1.0187 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218357025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = 20.452389 kcal Electronic energy + Delta-G solvation = -12727.418560 eV Core-core repulsion = 10595.530135 eV Total energy + Delta-G solvation = -2131.888424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.80779 -36.75027 -35.24888 -33.54815 -31.53804 -28.30866 -25.27346 -23.79522 -23.29195 -22.52205 -21.21299 -19.21526 -16.90827 -16.81423 -16.62781 -15.98411 -15.33626 -15.14019 -14.79299 -14.22966 -14.06689 -13.32105 -13.04881 -12.91103 -12.67256 -12.45013 -12.31999 -12.14184 -12.04075 -11.85117 -11.74824 -11.06032 -10.98564 -10.83430 -9.33967 -9.02941 -7.96828 -5.26874 1.46637 1.50727 1.56907 2.52379 2.79797 2.93008 3.36720 3.91542 4.05475 4.12763 4.17601 4.24974 4.28282 4.40594 4.57898 4.65135 4.71084 4.78526 4.82213 4.99871 5.09394 5.17158 5.22017 5.23764 5.34664 5.42923 5.46407 6.07752 6.21940 6.26590 7.30911 8.05173 8.29827 9.26958 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059079 B = 0.007030 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.828122 B = 3982.019084 C = 4317.541392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.514 5.514 4 C 0.067 3.933 5 C 0.166 3.834 6 N -0.748 5.748 7 C -0.249 4.249 8 H 0.074 0.926 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.978 3.022 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.276 1.276 15 C -0.013 4.013 16 C -0.172 4.172 17 C -0.148 4.148 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.017 0.983 27 H 0.373 0.627 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -4.465 -6.279 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.239 5.239 4 C -0.061 4.061 5 C 0.039 3.961 6 N -0.391 5.391 7 C -0.380 4.380 8 H 0.092 0.908 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.806 3.194 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.202 1.202 15 C -0.122 4.122 16 C -0.210 4.210 17 C -0.185 4.185 18 H 0.087 0.913 19 H 0.090 0.910 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.089 0.911 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.204 0.796 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.812 -4.036 -5.913 17.357 hybrid contribution 1.599 0.014 -0.216 1.614 sum -14.213 -4.022 -6.130 15.992 Atomic orbital electron populations 1.21940 0.93251 1.02270 1.02661 1.22140 0.97523 0.87413 1.00675 1.61787 1.16959 1.18378 1.26769 1.21996 0.87888 0.96749 0.99493 1.20586 0.84003 0.94846 0.96616 1.42520 1.07755 1.05820 1.82990 1.19592 0.93770 0.87057 1.37618 0.90760 1.25627 0.97306 1.00770 1.03075 1.69818 1.08556 1.27745 1.56090 0.85145 0.76985 0.78969 0.78264 1.20253 1.21838 1.20244 1.22404 0.99130 0.99539 0.91108 1.23040 1.04035 0.91015 1.02862 1.23313 0.91719 1.00809 1.02684 0.91304 0.91035 0.92506 0.94653 0.91141 0.95590 0.91109 0.95921 0.96545 0.79597 0.93851 0.90629 0.89460 0.88479 0.86981 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.63 71.98 0.62 -2.04 16 2 C 0.05 1.19 5.70 86.30 0.49 1.68 16 3 N -0.51 -15.21 4.60 -871.00 -4.01 -19.22 16 4 C 0.07 2.42 5.06 86.30 0.44 2.86 16 5 C 0.17 7.28 6.07 86.38 0.52 7.80 16 6 N -0.75 -40.51 5.60 -343.46 -1.92 -42.43 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 10 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 11 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C -0.01 -0.35 4.21 44.92 0.19 -0.16 16 16 C -0.17 -4.41 9.28 30.62 0.28 -4.13 16 17 C -0.15 -3.01 8.66 30.62 0.27 -2.74 16 18 H 0.07 1.15 5.72 -2.38 -0.01 1.13 16 19 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 20 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 21 H 0.04 0.82 8.04 -2.38 -0.02 0.80 16 22 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 23 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 24 H 0.07 2.57 7.86 -2.39 -0.02 2.55 16 25 H 0.02 1.00 6.59 -2.39 -0.02 0.99 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 28 H 0.25 15.30 8.31 -92.71 -0.77 14.52 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 2.12 5.93 -2.39 -0.01 2.10 16 Total: -1.00 -65.09 268.01 0.86 -64.23 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.36 Total: 23.46 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.12 Total: -14.46 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -5.65 Total: -122.38 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -65.09 0.86 -64.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218357025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.686 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds