Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46902 * 109.47263 * 2 1 4 4 C 1.48066 * 111.00127 * 293.95893 * 3 2 1 5 5 C 1.50739 * 112.93411 * 192.21901 * 4 3 2 6 6 C 1.54514 * 108.94022 * 92.64916 * 5 4 3 7 7 N 1.40081 * 111.51907 * 283.98096 * 6 5 4 8 8 C 1.47694 * 114.56640 * 61.44616 * 7 6 5 9 9 H 1.09001 * 109.73594 * 38.40050 * 8 7 6 10 10 C 1.50694 * 109.73771 * 159.05167 * 8 7 6 11 11 H 1.08000 * 120.00563 * 119.99973 * 10 8 7 12 12 C 1.37885 * 119.99902 * 300.00136 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47741 * 111.00014 * 166.35361 * 3 2 1 19 19 H 1.09003 * 109.47613 * 299.99666 * 1 2 3 20 20 H 1.09005 * 109.47447 * 60.00189 * 1 2 3 21 21 H 1.09001 * 109.47334 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47276 * 239.99975 * 2 1 3 23 23 H 1.08996 * 109.47036 * 120.00249 * 2 1 3 24 24 H 1.08996 * 108.79309 * 71.32690 * 4 3 2 25 25 H 1.09000 * 108.78471 * 313.10612 * 4 3 2 26 26 H 1.09004 * 109.55879 * 332.81627 * 5 4 3 27 27 H 1.09001 * 109.65279 * 212.54403 * 5 4 3 28 28 H 1.09006 * 109.06891 * 163.45362 * 6 5 4 29 29 H 1.09004 * 109.01797 * 44.46904 * 6 5 4 30 30 H 1.00905 * 110.99808 * 294.75423 * 7 6 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.09000 * 108.99528 * 324.31245 * 18 3 2 33 33 H 1.09007 * 108.99339 * 205.56856 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6673 2.0724 -1.2632 5 6 2.3891 3.3840 -1.4393 6 6 3.6888 3.1379 -2.2377 7 7 4.6786 2.5498 -1.4397 8 6 4.3205 1.2248 -0.8942 9 1 3.7670 0.6564 -1.6416 10 6 5.5715 0.4775 -0.5103 11 1 5.7211 0.1642 0.5124 12 6 6.5253 0.1938 -1.4647 13 7 6.3430 0.5749 -2.7102 14 14 8.0764 -0.7320 -0.9886 15 1 8.9343 -0.9100 -2.1877 16 1 8.8175 0.0402 0.0407 17 1 7.7101 -2.0627 -0.4407 18 6 3.4598 1.4374 0.3254 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 0.5934 2.2585 -1.2740 25 1 1.9167 1.4194 -2.0995 26 1 2.6344 3.7996 -0.4619 27 1 1.7531 4.0822 -1.9835 28 1 4.0581 4.0899 -2.6193 29 1 3.4703 2.4785 -3.0777 30 1 4.9702 3.1767 -0.7047 31 1 7.0142 0.3756 -3.3815 32 1 3.6862 0.6632 1.0586 33 1 3.6907 2.4112 0.7572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218743848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = 8.201392 kcal Electronic energy + Delta-G solvation = -13575.960066 eV Core-core repulsion = 11443.540398 eV Total energy + Delta-G solvation = -2132.419668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.73736 -34.80210 -32.87145 -30.85260 -30.26386 -26.55797 -24.60112 -23.82284 -21.51446 -20.43376 -18.72107 -16.83610 -15.22140 -14.95987 -14.46722 -14.21314 -13.75642 -13.55442 -13.40346 -12.28894 -11.86801 -11.64409 -11.51963 -11.47983 -10.93704 -10.87769 -10.63481 -10.53924 -10.42317 -10.11062 -9.95082 -9.82091 -9.03475 -8.36797 -7.60162 -6.59805 -5.84016 -3.98855 3.36264 3.41082 3.43422 4.46224 4.56135 5.28642 5.41613 5.52480 5.59390 5.72823 5.79242 5.92269 6.01684 6.13749 6.24069 6.32590 6.33399 6.39361 6.48088 6.54206 6.64570 6.67620 6.88816 6.99211 7.42053 7.71681 7.79221 7.95777 8.34046 8.71764 9.07815 9.19563 9.69864 11.19877 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.011932 C = 0.010034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.795776 B = 2346.125841 C = 2789.819626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.553 5.553 4 C 0.066 3.934 5 C -0.171 4.171 6 C 0.088 3.912 7 N -0.667 5.667 8 C 0.209 3.791 9 H 0.034 0.966 10 C -0.532 4.532 11 H 0.053 0.947 12 C 0.085 3.915 13 N -0.851 5.851 14 Si 0.883 3.117 15 H -0.289 1.289 16 H -0.277 1.277 17 H -0.279 1.279 18 C 0.034 3.966 19 H 0.056 0.944 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.318 0.682 31 H 0.255 0.745 32 H 0.064 0.936 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 1.905 2.684 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.279 5.279 4 C -0.061 4.061 5 C -0.212 4.212 6 C -0.046 4.046 7 N -0.295 5.295 8 C 0.102 3.898 9 H 0.052 0.948 10 C -0.571 4.571 11 H 0.071 0.929 12 C -0.122 4.122 13 N -0.486 5.486 14 Si 0.711 3.289 15 H -0.215 1.215 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.095 4.095 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.838 1.873 2.300 8.380 hybrid contribution 0.680 -0.598 0.185 0.924 sum -7.158 1.275 2.485 7.684 Atomic orbital electron populations 1.21792 0.96032 1.00684 1.01769 1.21987 0.94692 0.89778 1.00884 1.62197 1.17379 1.14900 1.33393 1.21723 0.98467 0.95208 0.90718 1.22627 1.00584 0.96456 1.01568 1.20960 0.88919 0.98089 0.96609 1.57794 1.39589 1.04780 1.27386 1.19211 0.93895 0.86642 0.90054 0.94837 1.20953 1.04722 1.36559 0.94839 0.92889 1.24946 0.97588 0.94689 0.94955 1.70066 1.33947 1.43528 1.01068 0.86850 0.83862 0.80376 0.77843 1.21456 1.20310 1.20490 1.22948 0.85178 1.00697 1.00646 0.92473 0.93161 0.92978 0.94787 0.91286 0.92634 0.94975 0.91881 0.92567 0.93453 0.92516 0.86313 0.93512 0.91739 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.84 37.15 0.37 -1.66 16 2 C 0.05 0.95 5.55 -3.83 -0.02 0.93 16 3 N -0.55 -10.44 4.73 -235.70 -1.12 -11.56 16 4 C 0.07 1.20 4.45 -4.31 -0.02 1.18 16 5 C -0.17 -3.00 5.67 -27.07 -0.15 -3.15 16 6 C 0.09 1.78 6.03 -6.55 -0.04 1.74 16 7 N -0.67 -15.66 5.35 -112.40 -0.60 -16.26 16 8 C 0.21 5.15 1.96 -69.54 -0.14 5.01 16 9 H 0.03 0.93 6.44 -51.93 -0.33 0.60 16 10 C -0.53 -14.54 8.67 -34.44 -0.30 -14.84 16 11 H 0.05 1.43 7.46 -52.49 -0.39 1.04 16 12 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 13 N -0.85 -24.83 12.78 55.43 0.71 -24.12 16 14 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.03 0.71 4.80 -4.48 -0.02 0.69 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.03 0.65 7.73 -51.93 -0.40 0.25 16 23 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 24 H 0.06 0.90 7.03 -51.93 -0.37 0.54 16 25 H 0.03 0.64 6.29 -51.93 -0.33 0.32 16 26 H 0.06 1.13 7.19 -51.93 -0.37 0.76 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.26 7.59 -51.93 -0.39 0.87 16 30 H 0.32 7.11 8.15 -39.29 -0.32 6.79 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.39 6.93 -51.93 -0.36 1.03 16 33 H 0.05 1.14 6.73 -51.92 -0.35 0.79 16 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -28.54 253.01 -7.83 -36.37 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.20 Total: 3.26 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.42 Total: -7.83 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -1.01 Total: -51.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.54 -7.83 -36.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.572 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds