Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48066 * 111.00143 * 2 1 4 4 C 1.53909 * 112.60959 * 192.08513 * 3 2 1 5 5 C 1.50802 * 111.98196 * 318.85425 * 4 3 2 6 6 N 1.47904 * 108.66891 * 92.32252 * 5 4 3 7 7 C 1.46910 * 110.99892 * 153.69233 * 6 5 4 8 8 C 1.40010 * 114.07361 * 279.98269 * 6 5 4 9 9 H 1.09003 * 108.95818 * 301.14025 * 8 6 5 10 10 C 1.50693 * 108.96507 * 182.47581 * 8 6 5 11 11 H 1.08009 * 119.99850 * 324.83315 * 10 8 6 12 12 C 1.37875 * 120.00331 * 144.82769 * 10 8 6 13 13 N 1.31513 * 119.99616 * 5.56319 * 12 10 8 14 14 Si 1.86802 * 119.99927 * 185.56870 * 12 10 8 15 15 H 1.48495 * 109.47437 * 60.00206 * 14 12 10 16 16 H 1.48499 * 109.46939 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47209 * 299.99615 * 14 12 10 18 18 C 1.44570 * 111.00198 * 232.31605 * 2 1 3 19 19 H 1.08995 * 109.47267 * 187.68518 * 1 2 3 20 20 H 1.09003 * 109.47062 * 307.68616 * 1 2 3 21 21 H 1.09000 * 109.47146 * 67.68149 * 1 2 3 22 22 H 1.09000 * 108.88328 * 312.97203 * 3 2 1 23 23 H 1.09008 * 108.87985 * 71.52622 * 3 2 1 24 24 H 1.08990 * 109.27328 * 198.03642 * 4 3 2 25 25 H 1.09004 * 108.76162 * 79.31840 * 4 3 2 26 26 H 1.09007 * 109.63286 * 332.51944 * 5 4 3 27 27 H 1.09005 * 109.63267 * 212.13216 * 5 4 3 28 28 H 1.08995 * 109.46652 * 65.64279 * 7 6 5 29 29 H 1.08998 * 109.47125 * 185.64303 * 7 6 5 30 30 H 1.09001 * 109.46773 * 305.64370 * 7 6 5 31 31 H 0.97000 * 119.99590 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.57619 * 100.53628 * 18 2 1 33 33 H 1.09006 * 109.67815 * 340.22351 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 3.5087 1.4368 -0.2975 5 6 4.2632 0.3383 0.4084 6 7 4.3611 -0.8266 -0.4977 7 6 5.5406 -1.6429 -0.1801 8 6 3.2040 -1.6135 -0.5433 9 1 2.9837 -1.9778 0.4602 10 6 3.4496 -2.7938 -1.4474 11 1 4.0712 -2.6826 -2.3237 12 6 2.8811 -4.0156 -1.1560 13 7 2.0377 -4.1258 -0.1530 14 14 3.3088 -5.5142 -2.1859 15 1 4.7694 -5.7698 -2.1052 16 1 2.5709 -6.6955 -1.6711 17 1 2.9266 -5.2687 -3.5997 18 6 1.9871 -0.8251 -1.0681 19 1 -0.3633 -1.0184 0.1374 20 1 -0.3633 0.6283 0.8133 21 1 -0.3633 0.3903 -0.9507 22 1 1.4698 1.9636 -0.7546 23 1 1.8210 1.8287 0.9783 24 1 3.9041 2.4005 0.0232 25 1 3.6581 1.3347 -1.3724 26 1 3.7308 0.0528 1.3157 27 1 5.2633 0.6876 0.6654 28 1 5.4208 -2.0850 0.8089 29 1 5.6449 -2.4346 -0.9220 30 1 6.4311 -1.0144 -0.1918 31 1 1.6374 -4.9854 0.0518 32 1 2.2934 -0.1933 -1.9019 33 1 1.2170 -1.5210 -1.4010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218743934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -1.956759 kcal Electronic energy + Delta-G solvation = -13689.251380 eV Core-core repulsion = 11556.391222 eV Total energy + Delta-G solvation = -2132.860158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19932 -36.92587 -34.91546 -32.99089 -30.25244 -27.93261 -26.97710 -25.40970 -24.23471 -21.11880 -20.69960 -18.54490 -17.14090 -16.57131 -16.09182 -15.81038 -15.66894 -14.97027 -14.40522 -14.20001 -13.71391 -13.31553 -13.16486 -13.03385 -12.77708 -12.64463 -12.28649 -12.14805 -11.85320 -11.75434 -11.50393 -11.45628 -10.93783 -10.52745 -8.91653 -8.71907 -8.07750 -6.20678 1.41706 1.43142 1.50913 2.42645 3.09499 3.29083 3.57630 4.07852 4.24986 4.37389 4.47349 4.59546 4.67111 4.74319 4.77512 4.87823 4.91815 4.96348 5.01190 5.04413 5.17172 5.25044 5.45821 5.47389 5.66182 5.81374 6.17145 6.42236 6.47421 6.60041 7.04126 7.12198 7.51595 8.97382 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038349 B = 0.013495 C = 0.010800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.960878 B = 2074.346098 C = 2592.029178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.578 5.578 3 C 0.063 3.937 4 C -0.111 4.111 5 C 0.066 3.934 6 N -0.559 5.559 7 C 0.056 3.944 8 C 0.230 3.770 9 H -0.022 1.022 10 C -0.520 4.520 11 H 0.053 0.947 12 C 0.015 3.985 13 N -0.920 5.920 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.270 1.270 18 C 0.103 3.897 19 H 0.045 0.955 20 H 0.080 0.920 21 H 0.024 0.976 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.018 0.982 27 H 0.080 0.920 28 H -0.008 1.008 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.260 0.740 32 H 0.022 0.978 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 9.149 0.225 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.304 5.304 3 C -0.064 4.064 4 C -0.149 4.149 5 C -0.061 4.061 6 N -0.284 5.284 7 C -0.092 4.092 8 C 0.121 3.879 9 H -0.004 1.004 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.185 4.185 13 N -0.559 5.559 14 Si 0.779 3.221 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.195 1.195 18 C -0.026 4.026 19 H 0.064 0.936 20 H 0.099 0.901 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.489 9.003 0.286 9.130 hybrid contribution -0.537 -1.214 -0.329 1.368 sum 0.952 7.789 -0.043 7.847 Atomic orbital electron populations 1.22244 0.87030 1.01277 1.00165 1.60802 1.07820 1.13039 1.48703 1.22487 0.95456 0.87507 1.00952 1.21451 0.93588 0.98928 1.00925 1.21750 0.99541 0.91369 0.93453 1.59415 1.05202 1.11465 1.52301 1.22039 0.92206 0.97192 0.97731 1.17940 0.86353 0.89273 0.94383 1.00433 1.21362 1.29944 0.94644 1.10009 0.92846 1.25750 0.94742 1.01658 0.96333 1.70140 1.29889 1.25294 1.30540 0.85686 0.78571 0.78745 0.79111 1.19413 1.21237 1.19548 1.21736 0.97014 0.93274 0.90536 0.93622 0.90100 0.95779 0.94637 0.90322 0.88240 0.92598 0.96349 0.90132 0.98908 0.92271 0.90844 0.93154 0.95956 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.29 127.69 1.19 2.64 16 2 N -0.58 -23.84 4.20 -920.98 -3.86 -27.71 16 3 C 0.06 2.03 5.46 86.39 0.47 2.50 16 4 C -0.11 -3.48 5.39 30.19 0.16 -3.31 16 5 C 0.07 2.44 5.33 85.40 0.46 2.90 16 6 N -0.56 -25.21 4.16 -916.88 -3.81 -29.02 16 7 C 0.06 2.38 9.10 127.69 1.16 3.54 16 8 C 0.23 12.11 1.65 45.82 0.08 12.18 16 9 H -0.02 -1.36 7.31 -2.39 -0.02 -1.38 16 10 C -0.52 -29.20 6.39 25.60 0.16 -29.03 16 11 H 0.05 2.99 7.57 -2.91 -0.02 2.97 16 12 C 0.01 0.82 5.45 84.65 0.46 1.28 16 13 N -0.92 -55.16 12.85 21.45 0.28 -54.89 16 14 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 C 0.10 4.99 4.81 87.15 0.42 5.40 16 19 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 20 H 0.08 2.38 8.11 -2.39 -0.02 2.36 16 21 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 22 H 0.04 1.05 8.03 -2.39 -0.02 1.03 16 23 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 1.92 7.25 -2.38 -0.02 1.91 16 26 H 0.02 0.76 7.57 -2.38 -0.02 0.74 16 27 H 0.08 2.50 7.72 -2.38 -0.02 2.48 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.06 2.70 6.44 -2.39 -0.02 2.69 16 30 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.02 1.05 6.94 -2.39 -0.02 1.03 16 33 H 0.03 1.88 7.42 -2.38 -0.02 1.87 16 Total: -1.00 -63.74 256.17 0.23 -63.51 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.05 Total: 3.69 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.56 Total: -1.90 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -7.40 Total: -111.62 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.74 0.23 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.553 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds