Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47854 * 111.00219 * 2 1 4 4 C 1.54904 * 104.79847 * 146.36453 * 3 2 1 5 5 C 1.55399 * 101.74116 * 323.01915 * 4 3 2 6 6 C 1.47447 * 111.00373 * 120.84078 * 2 1 3 7 7 H 1.09000 * 109.88442 * 117.17299 * 6 2 1 8 8 C 1.52999 * 109.88289 * 356.14892 * 6 2 1 9 9 N 1.46910 * 109.46652 * 176.07872 * 8 6 2 10 10 C 1.46900 * 110.99465 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46467 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00409 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99404 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99753 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00470 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46997 * 269.99784 * 15 13 11 17 17 H 1.48497 * 109.47079 * 29.99490 * 15 13 11 18 18 H 1.48497 * 109.47129 * 149.99608 * 15 13 11 19 19 H 1.09003 * 109.46582 * 297.72723 * 1 2 3 20 20 H 1.08998 * 109.46778 * 57.72630 * 1 2 3 21 21 H 1.08997 * 109.47003 * 177.72970 * 1 2 3 22 22 H 1.09003 * 110.37356 * 265.19726 * 3 2 1 23 23 H 1.09003 * 110.36807 * 27.42458 * 3 2 1 24 24 H 1.08993 * 110.99021 * 81.02200 * 4 3 2 25 25 H 1.09006 * 110.98873 * 204.80486 * 4 3 2 26 26 H 1.09002 * 110.67973 * 277.17890 * 5 4 3 27 27 H 1.09005 * 110.84537 * 153.86009 * 5 4 3 28 28 H 1.08999 * 109.47122 * 56.08428 * 8 6 2 29 29 H 1.08995 * 109.47480 * 296.08286 * 8 6 2 30 30 H 1.00901 * 110.99467 * 56.05327 * 9 8 6 31 31 H 1.08995 * 109.47281 * 60.00547 * 10 9 8 32 32 H 1.09004 * 109.47345 * 299.99790 * 10 9 8 33 33 H 0.96995 * 120.00204 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3048 1.3028 0.8296 5 6 2.9182 0.2790 1.9329 6 6 1.9975 -0.7057 1.1819 7 1 2.5674 -1.5800 0.8675 8 6 0.8438 -1.1355 2.0903 9 7 1.3723 -1.9183 3.2156 10 6 0.2903 -2.3496 4.1107 11 6 0.8696 -3.1473 5.2506 12 1 1.9348 -3.3172 5.3044 13 6 0.0395 -3.6602 6.2248 14 7 0.5449 -4.3568 7.2193 15 14 -1.8029 -3.3669 6.1315 16 1 -2.1419 -2.1139 6.8527 17 1 -2.2134 -3.2460 4.7095 18 1 -2.5181 -4.5077 6.7579 19 1 -0.3632 0.4782 0.9097 20 1 -0.3633 0.5487 -0.8689 21 1 -0.3633 -1.0268 -0.0407 22 1 2.2148 1.7039 -1.0183 23 1 1.2881 2.0596 0.4707 24 1 4.1302 0.9283 0.2243 25 1 3.5499 2.2723 1.2634 26 1 2.3783 0.7707 2.7421 27 1 3.8019 -0.2335 2.3132 28 1 0.1415 -1.7451 1.5218 29 1 0.3323 -0.2515 2.4709 30 1 2.0737 -1.3974 3.7204 31 1 -0.4155 -2.9677 3.5561 32 1 -0.2254 -1.4742 4.5056 33 1 -0.0390 -4.7179 7.9045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226056951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = 6.483141 kcal Electronic energy + Delta-G solvation = -12869.766465 eV Core-core repulsion = 10737.272288 eV Total energy + Delta-G solvation = -2132.494177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40130 -35.17687 -32.45947 -32.11193 -29.86440 -26.83404 -25.56742 -23.73972 -21.47072 -20.83619 -19.31551 -16.89821 -16.18622 -15.64243 -15.05070 -14.37638 -14.14904 -13.66137 -13.01221 -12.80420 -12.62044 -12.44182 -12.19584 -11.65200 -11.34479 -11.25975 -11.09170 -10.78744 -10.68635 -10.53466 -10.21413 -9.82212 -9.31420 -8.61804 -8.23842 -7.50196 -6.07456 -4.05519 3.26549 3.34293 3.37127 4.02582 4.40401 4.68253 4.71851 4.91908 5.17920 5.25018 5.33967 5.40174 5.46004 5.55950 5.64124 5.68245 5.80959 5.92428 5.95385 6.07934 6.11311 6.19393 6.50602 6.75619 6.97154 7.06431 7.08235 7.58859 7.86811 8.30657 8.63144 9.00496 9.54368 11.05860 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.007551 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.675283 B = 3707.178577 C = 4023.056466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.039 3.961 4 C -0.129 4.129 5 C -0.139 4.139 6 C 0.073 3.927 7 H 0.096 0.904 8 C 0.042 3.958 9 N -0.677 5.677 10 C 0.165 3.835 11 C -0.517 4.517 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.267 1.267 18 H -0.285 1.285 19 H 0.032 0.968 20 H 0.061 0.939 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.334 0.666 31 H 0.026 0.974 32 H -0.023 1.023 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 11.424 -12.655 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.088 4.088 4 C -0.167 4.167 5 C -0.177 4.177 6 C -0.035 4.035 7 H 0.114 0.886 8 C -0.088 4.088 9 N -0.308 5.308 10 C 0.037 3.963 11 C -0.555 4.555 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.192 1.192 18 H -0.211 1.211 19 H 0.050 0.950 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.152 0.848 31 H 0.044 0.956 32 H -0.005 1.005 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.204 10.461 -13.301 16.964 hybrid contribution -1.619 1.336 1.308 2.473 sum -0.414 11.797 -11.993 16.827 Atomic orbital electron populations 1.22580 0.88202 1.02494 1.00199 1.63803 1.07967 1.13785 1.39749 1.23069 0.95725 0.89903 1.00150 1.22728 0.97548 0.99285 0.97159 1.22915 1.00290 0.96835 0.97680 1.22494 0.95486 0.97153 0.88404 0.88648 1.22550 0.96329 0.95750 0.94204 1.60464 1.15526 1.42722 1.12085 1.20004 0.90334 0.94209 0.91762 1.21066 0.96489 1.32569 1.05358 0.90239 1.24910 0.98568 0.94770 0.95091 1.69898 1.35477 1.35879 1.12612 0.86814 0.86052 0.77945 0.78630 1.20396 1.19203 1.21052 0.94987 0.92029 0.90800 0.90524 0.93908 0.90704 0.91122 0.91649 0.90138 0.90976 0.96453 0.84823 0.95568 1.00494 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.26 60.06 0.50 0.67 16 2 N -0.53 -7.13 5.44 -231.56 -1.26 -8.39 16 3 C 0.04 0.45 6.73 -2.29 -0.02 0.43 16 4 C -0.13 -1.40 7.08 -24.45 -0.17 -1.57 16 5 C -0.14 -1.81 5.60 -24.77 -0.14 -1.95 16 6 C 0.07 1.08 3.68 -66.72 -0.25 0.83 16 7 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 8 C 0.04 0.73 3.80 -3.82 -0.01 0.72 16 9 N -0.68 -14.30 6.49 -115.05 -0.75 -15.04 16 10 C 0.16 4.10 4.51 -4.97 -0.02 4.08 16 11 C -0.52 -15.02 9.87 -34.44 -0.34 -15.36 16 12 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 15 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H 0.03 0.41 6.52 -51.93 -0.34 0.07 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 29 H 0.02 0.30 6.86 -51.93 -0.36 -0.05 16 30 H 0.33 6.79 7.87 -39.29 -0.31 6.48 16 31 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 32 H -0.02 -0.56 7.57 -51.93 -0.39 -0.95 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 259.03 15.07 3.90 3.90 Total: -1.00 -30.59 259.03 -7.94 -38.52 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.39 Total: 1.19 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.55 Total: -10.24 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -1.23 Total: -50.55 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.59 -7.94 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226056951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.005 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds