Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00108 * 2 1 4 4 H 1.08004 * 119.99896 * 160.07433 * 3 2 1 5 5 C 1.38813 * 119.99993 * 339.78993 * 3 2 1 6 6 N 1.31617 * 119.99723 * 347.98274 * 5 3 2 7 7 Si 1.86789 * 120.00115 * 167.97303 * 5 3 2 8 8 H 1.48505 * 109.46949 * 60.00644 * 7 5 3 9 9 H 1.48497 * 109.47520 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47353 * 300.00547 * 7 5 3 11 11 C 1.46507 * 119.99924 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.46903 * 269.99811 * 11 2 1 13 13 H 1.09004 * 109.46633 * 65.00210 * 12 11 2 14 14 C 1.53041 * 109.46229 * 184.97917 * 12 11 2 15 15 C 1.53114 * 109.27956 * 179.20718 * 14 12 11 16 16 C 1.53124 * 109.15403 * 302.32967 * 15 14 12 17 17 C 1.53033 * 109.27744 * 57.65951 * 16 15 14 18 18 N 1.46846 * 109.46624 * 305.02313 * 12 11 2 19 19 H 1.08994 * 109.47069 * 84.88854 * 1 2 3 20 20 H 1.09000 * 109.47116 * 204.88351 * 1 2 3 21 21 H 1.08998 * 109.47265 * 324.88448 * 1 2 3 22 22 H 0.97002 * 119.99985 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.47131 * 30.00079 * 11 2 1 24 24 H 1.09001 * 109.47026 * 150.00182 * 11 2 1 25 25 H 1.08996 * 109.50443 * 299.13963 * 14 12 11 26 26 H 1.08998 * 109.50251 * 59.25497 * 14 12 11 27 27 H 1.09008 * 109.52641 * 182.43069 * 15 14 12 28 28 H 1.09002 * 109.58881 * 62.26860 * 15 14 12 29 29 H 1.09004 * 109.50023 * 297.71854 * 16 15 14 30 30 H 1.08995 * 109.53561 * 177.62056 * 16 15 14 31 31 H 1.08995 * 109.46465 * 180.80538 * 17 16 15 32 32 H 1.09005 * 109.46331 * 60.83839 * 17 16 15 33 33 H 1.00897 * 110.99916 * 54.14062 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1812 1.2138 0.3188 5 6 1.5197 2.3511 -0.4153 6 7 0.3563 2.2878 -1.0275 7 14 2.3230 4.0086 -0.1051 8 1 3.6434 4.0534 -0.7834 9 1 1.4544 5.0876 -0.6403 10 1 2.5099 4.2027 1.3552 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7097 1.4432 13 1 1.5016 -1.9255 1.9306 14 6 3.3236 -2.9681 1.4454 15 6 3.5926 -3.3942 2.8913 16 6 4.2667 -2.2399 3.6381 17 6 3.3686 -1.0026 3.5724 18 7 3.1414 -0.6350 2.1689 19 1 -0.3633 0.0916 -1.0235 20 1 -0.3633 -0.9323 0.4324 21 1 -0.3634 0.8406 0.5911 22 1 -0.0838 3.1020 -1.3180 23 1 1.6084 -2.0287 -0.5129 24 1 3.1499 -1.1387 -0.5133 25 1 2.8054 -3.7703 0.9202 26 1 4.2692 -2.7569 0.9462 27 1 4.2483 -4.2650 2.8985 28 1 2.6507 -3.6435 3.3800 29 1 5.2273 -2.0175 3.1733 30 1 4.4228 -2.5214 4.6795 31 1 3.8521 -0.1748 4.0910 32 1 2.4133 -1.2215 4.0496 33 1 2.6309 0.2326 2.1004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234259114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = 12.605642 kcal Electronic energy + Delta-G solvation = -13371.203308 eV Core-core repulsion = 11238.974623 eV Total energy + Delta-G solvation = -2132.228685 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.30581 -35.25126 -31.92780 -31.30638 -29.97265 -25.95420 -25.69650 -23.03618 -21.94436 -20.15842 -19.10884 -16.65139 -15.81289 -14.78832 -14.43216 -14.02394 -13.63093 -13.23936 -12.88692 -12.76131 -12.28248 -12.11885 -11.45367 -11.04853 -10.78850 -10.77073 -10.56014 -10.48473 -10.22906 -10.03939 -9.98614 -9.85337 -9.53086 -8.47070 -7.67282 -6.67335 -5.64031 -3.08092 3.44695 3.49567 3.51048 4.56987 4.85344 5.16492 5.22692 5.29488 5.51983 5.57204 5.77538 5.88946 5.90472 6.00760 6.12872 6.23102 6.30022 6.31135 6.42216 6.51386 6.61963 6.68787 6.82109 7.02421 7.46024 7.79633 7.85672 7.94534 8.29599 8.49016 9.33485 9.97219 10.45003 11.41200 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.010665 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.481548 B = 2624.803655 C = 3022.175900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.606 5.606 3 C -0.248 4.248 4 H 0.081 0.919 5 C -0.005 4.005 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.293 1.293 10 H -0.285 1.285 11 C 0.155 3.845 12 C 0.070 3.930 13 H 0.022 0.978 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.115 4.115 17 C 0.057 3.943 18 N -0.679 5.679 19 H 0.028 0.972 20 H -0.008 1.008 21 H 0.044 0.956 22 H 0.251 0.749 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 -8.443 6.930 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.329 5.329 3 C -0.377 4.377 4 H 0.099 0.901 5 C -0.202 4.202 6 N -0.559 5.559 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.219 1.219 10 H -0.212 1.212 11 C 0.027 3.973 12 C -0.043 4.043 13 H 0.040 0.960 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.073 4.073 18 N -0.316 5.316 19 H 0.046 0.954 20 H 0.011 0.989 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.787 -8.463 6.637 11.772 hybrid contribution -0.605 1.029 0.529 1.306 sum 4.181 -7.434 7.166 11.140 Atomic orbital electron populations 1.20794 0.82815 0.95095 0.99351 1.43990 1.01749 1.00914 1.86253 1.19355 0.96880 0.84714 1.36767 0.90139 1.25033 0.97641 0.98446 0.99085 1.70087 1.17024 1.26628 1.42188 0.86323 0.78415 0.83834 0.77902 1.21001 1.21919 1.21185 1.20826 0.96165 0.88255 0.92038 1.22164 0.93263 0.90672 0.98176 0.96016 1.21589 1.00587 0.96966 0.95806 1.21547 0.99888 0.97461 0.96680 1.21567 0.99558 0.95133 0.99030 1.21849 0.97277 0.97103 0.91091 1.60353 1.54433 1.06959 1.09888 0.95407 0.98939 0.93745 0.93915 0.94475 0.92875 0.92445 0.91479 0.92676 0.92880 0.91487 0.92711 0.91737 0.96454 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.96 59.85 0.54 4.67 16 2 N -0.61 -15.29 2.61 -181.12 -0.47 -15.76 16 3 C -0.25 -6.73 7.94 -15.06 -0.12 -6.85 16 4 H 0.08 2.16 7.32 -52.48 -0.38 1.78 16 5 C 0.00 -0.13 5.13 -17.43 -0.09 -0.22 16 6 N -0.91 -26.91 10.49 55.49 0.58 -26.33 16 7 Si 0.90 22.13 29.57 -169.99 -5.03 17.10 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.15 3.29 5.41 -4.04 -0.02 3.26 16 12 C 0.07 1.30 2.79 -67.72 -0.19 1.11 16 13 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 14 C -0.11 -1.70 5.37 -26.65 -0.14 -1.84 16 15 C -0.12 -1.59 6.00 -26.61 -0.16 -1.75 16 16 C -0.11 -1.57 6.09 -26.65 -0.16 -1.74 16 17 C 0.06 0.91 6.55 -3.83 -0.03 0.88 16 18 N -0.68 -13.03 6.16 -106.76 -0.66 -13.69 16 19 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 20 H -0.01 -0.18 8.03 -51.93 -0.42 -0.60 16 21 H 0.04 1.19 7.12 -51.93 -0.37 0.82 16 22 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.37 8.00 6.27 -39.29 -0.25 7.75 16 LS Contribution 258.27 15.07 3.89 3.89 Total: -1.00 -28.69 258.27 -7.64 -36.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.58 Total: 0.92 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.37 Total: -2.46 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.55 Total: -55.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.69 -7.64 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234259114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.935 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds