Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00108 * 2 1 4 4 H 1.08004 * 119.99896 * 160.07433 * 3 2 1 5 5 C 1.38813 * 119.99993 * 339.78993 * 3 2 1 6 6 N 1.31617 * 119.99723 * 347.98274 * 5 3 2 7 7 Si 1.86789 * 120.00115 * 167.97303 * 5 3 2 8 8 H 1.48505 * 109.46949 * 60.00644 * 7 5 3 9 9 H 1.48497 * 109.47520 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47353 * 300.00547 * 7 5 3 11 11 C 1.46507 * 119.99924 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.46903 * 269.99811 * 11 2 1 13 13 H 1.09004 * 109.46633 * 65.00210 * 12 11 2 14 14 C 1.53041 * 109.46229 * 184.97917 * 12 11 2 15 15 C 1.53114 * 109.27956 * 179.20718 * 14 12 11 16 16 C 1.53124 * 109.15403 * 302.32967 * 15 14 12 17 17 C 1.53033 * 109.27744 * 57.65951 * 16 15 14 18 18 N 1.46846 * 109.46624 * 305.02313 * 12 11 2 19 19 H 1.08994 * 109.47069 * 84.88854 * 1 2 3 20 20 H 1.09000 * 109.47116 * 204.88351 * 1 2 3 21 21 H 1.08998 * 109.47265 * 324.88448 * 1 2 3 22 22 H 0.97002 * 119.99985 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.47131 * 30.00079 * 11 2 1 24 24 H 1.09001 * 109.47026 * 150.00182 * 11 2 1 25 25 H 1.08996 * 109.50443 * 299.13963 * 14 12 11 26 26 H 1.08998 * 109.50251 * 59.25497 * 14 12 11 27 27 H 1.09008 * 109.52641 * 182.43069 * 15 14 12 28 28 H 1.09002 * 109.58881 * 62.26860 * 15 14 12 29 29 H 1.09004 * 109.50023 * 297.71854 * 16 15 14 30 30 H 1.08995 * 109.53561 * 177.62056 * 16 15 14 31 31 H 1.08995 * 109.46465 * 180.80538 * 17 16 15 32 32 H 1.09005 * 109.46331 * 60.83839 * 17 16 15 33 33 H 1.00897 * 110.99916 * 54.14062 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1812 1.2138 0.3188 5 6 1.5197 2.3511 -0.4153 6 7 0.3563 2.2878 -1.0275 7 14 2.3230 4.0086 -0.1051 8 1 3.6434 4.0534 -0.7834 9 1 1.4544 5.0876 -0.6403 10 1 2.5099 4.2027 1.3552 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7097 1.4432 13 1 1.5016 -1.9255 1.9306 14 6 3.3236 -2.9681 1.4454 15 6 3.5926 -3.3942 2.8913 16 6 4.2667 -2.2399 3.6381 17 6 3.3686 -1.0026 3.5724 18 7 3.1414 -0.6350 2.1689 19 1 -0.3633 0.0916 -1.0235 20 1 -0.3633 -0.9323 0.4324 21 1 -0.3634 0.8406 0.5911 22 1 -0.0838 3.1020 -1.3180 23 1 1.6084 -2.0287 -0.5129 24 1 3.1499 -1.1387 -0.5133 25 1 2.8054 -3.7703 0.9202 26 1 4.2692 -2.7569 0.9462 27 1 4.2483 -4.2650 2.8985 28 1 2.6507 -3.6435 3.3800 29 1 5.2273 -2.0175 3.1733 30 1 4.4228 -2.5214 4.6795 31 1 3.8521 -0.1748 4.0910 32 1 2.4133 -1.2215 4.0496 33 1 2.6309 0.2326 2.1004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234259114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = -5.619546 kcal Electronic energy + Delta-G solvation = -13371.993612 eV Core-core repulsion = 11238.974623 eV Total energy + Delta-G solvation = -2133.018988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70928 -37.08961 -33.70389 -32.62159 -31.67276 -27.93717 -27.44814 -24.43697 -23.51766 -21.78508 -20.42847 -18.68341 -17.24289 -16.77099 -15.95421 -15.45562 -15.21053 -14.80630 -14.52181 -14.26908 -13.77325 -13.58124 -13.17835 -12.74881 -12.67491 -12.55393 -12.23385 -12.01229 -11.89226 -11.71475 -11.58512 -11.31131 -11.05158 -10.56280 -9.17349 -8.70676 -7.76526 -5.22294 1.49552 1.51084 1.57652 2.55570 3.33231 3.49752 3.71786 4.05575 4.08698 4.20587 4.37113 4.57092 4.62028 4.67060 4.81439 4.87863 4.91734 4.98011 5.08584 5.16069 5.19021 5.28835 5.38005 5.41169 5.57792 5.69341 5.78139 6.35526 6.48036 6.67875 7.21747 7.93687 8.36640 9.27328 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.010665 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.481548 B = 2624.803655 C = 3022.175900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.619 5.619 3 C -0.241 4.241 4 H 0.082 0.918 5 C -0.062 4.062 6 N -0.946 5.946 7 Si 0.967 3.033 8 H -0.279 1.279 9 H -0.299 1.299 10 H -0.278 1.278 11 C 0.153 3.847 12 C 0.078 3.922 13 H 0.012 0.988 14 C -0.107 4.107 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.053 3.947 18 N -0.692 5.692 19 H 0.002 0.998 20 H 0.021 0.979 21 H 0.019 0.981 22 H 0.244 0.756 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.015 0.985 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -9.677 8.129 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.343 5.343 3 C -0.372 4.372 4 H 0.099 0.901 5 C -0.256 4.256 6 N -0.594 5.594 7 Si 0.796 3.204 8 H -0.205 1.205 9 H -0.226 1.226 10 H -0.204 1.204 11 C 0.027 3.973 12 C -0.034 4.034 13 H 0.030 0.970 14 C -0.145 4.145 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.076 4.076 18 N -0.327 5.327 19 H 0.020 0.980 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.083 -9.745 7.858 13.918 hybrid contribution -0.976 1.339 0.175 1.666 sum 5.107 -8.406 8.033 12.699 Atomic orbital electron populations 1.20513 0.83088 0.95439 0.97489 1.44200 1.01885 1.01917 1.86287 1.19576 0.96850 0.85571 1.35159 0.90056 1.25762 0.98444 1.01664 0.99718 1.70257 1.18469 1.26832 1.43865 0.85327 0.77384 0.79745 0.77911 1.20469 1.22599 1.20401 1.20996 0.95352 0.86880 0.94096 1.22010 0.93728 0.91920 0.95788 0.97034 1.21565 0.99724 0.95547 0.97682 1.21546 1.00612 0.98150 0.94946 1.21564 0.98615 0.93967 1.00721 1.21988 0.97836 0.98657 0.89161 1.60398 1.53899 1.06304 1.12090 0.98005 0.96014 0.96241 0.94630 0.93224 0.93788 0.90864 0.91878 0.90153 0.92592 0.91842 0.90158 0.91172 0.96645 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 8.96 127.77 1.15 10.28 16 2 N -0.62 -31.29 2.61 -726.94 -1.90 -33.19 16 3 C -0.24 -13.16 7.94 84.03 0.67 -12.50 16 4 H 0.08 4.36 7.32 -2.91 -0.02 4.34 16 5 C -0.06 -3.51 5.13 84.86 0.44 -3.08 16 6 N -0.95 -56.92 10.49 21.65 0.23 -56.69 16 7 Si 0.97 45.94 29.57 68.60 2.03 47.97 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 C 0.15 6.36 5.41 86.38 0.47 6.82 16 12 C 0.08 2.78 2.79 44.94 0.13 2.90 16 13 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 14 C -0.11 -2.97 5.37 30.65 0.16 -2.80 16 15 C -0.11 -2.66 6.00 30.67 0.18 -2.48 16 16 C -0.11 -2.67 6.09 30.65 0.19 -2.49 16 17 C 0.05 1.59 6.55 86.32 0.57 2.16 16 18 N -0.69 -25.79 6.16 -491.68 -3.03 -28.82 16 19 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 20 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 21 H 0.02 1.05 7.12 -2.39 -0.02 1.03 16 22 H 0.24 14.42 8.31 -92.71 -0.77 13.64 16 23 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 24 H 0.04 1.89 8.04 -2.39 -0.02 1.88 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.35 15.07 6.27 -89.70 -0.56 14.51 16 Total: -1.00 -61.01 258.27 1.76 -59.25 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.50 Total: 12.67 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 3.94 Total: -1.18 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -4.70 Total: -118.70 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -61.01 1.76 -59.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234259114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.627 kcal (2) G-P(sol) polarization free energy of solvation -61.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds