Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 S 1.75873 * 125.19685 * 284.69888 * 12 9 7 14 14 C 1.75869 * 91.01915 * 179.97438 * 13 12 9 15 15 C 1.33432 * 109.65991 * 0.31039 * 14 13 12 16 16 C 1.33628 * 125.19493 * 104.99294 * 12 9 7 17 17 O 1.36238 * 122.58821 * 359.96829 * 16 12 9 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 20 20 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 21 21 H 1.08001 * 125.17031 * 180.02562 * 14 13 12 22 22 H 1.08001 * 122.55537 * 179.78186 * 15 14 13 23 23 H 0.96696 * 114.00128 * 89.98711 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 16 3.1664 -4.1780 -1.3896 14 6 3.9219 -5.4463 -0.4338 15 6 3.4506 -5.4092 0.8140 16 6 2.5162 -4.4135 1.0554 17 8 1.9339 -4.2336 2.2738 18 1 -0.4850 -0.8401 -0.0004 19 1 0.9653 -2.5260 -2.0381 20 1 -0.1569 -3.4139 -1.1907 21 1 4.6526 -6.1512 -0.8021 22 1 3.7730 -6.1014 1.5778 23 1 1.1169 -4.7358 2.3973 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238600576.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -13.111517 kcal Electronic energy + Delta-G solvation = -10654.186441 eV Core-core repulsion = 8594.210597 eV Total energy + Delta-G solvation = -2059.975845 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.041 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.71222 -35.05635 -34.52352 -31.31005 -28.34640 -25.38575 -23.35550 -21.29572 -19.43220 -17.30605 -16.74741 -16.23955 -14.92873 -14.47670 -13.69133 -13.47498 -13.21365 -13.05331 -11.97845 -11.74794 -11.46693 -10.74123 -10.67222 -10.30156 -10.10738 -10.02182 -8.94057 -8.33701 -8.04945 -7.76810 -7.60020 -6.19986 -4.02219 1.48613 2.09065 2.50263 3.02344 3.49723 3.51538 3.69880 4.61017 4.85563 5.42538 5.50279 5.60289 5.97681 6.11679 6.28092 6.70557 6.76519 7.09356 7.91603 8.12372 8.21124 8.59696 8.67054 9.02762 9.79794 11.20272 Molecular weight = 199.04amu Principal moments of inertia in cm(-1) A = 0.044042 B = 0.012058 C = 0.011628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.605166 B = 2321.616441 C = 2407.378210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.040 3.960 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.606 4.606 8 H 0.047 0.953 9 C 0.270 3.730 10 H 0.053 0.947 11 N -0.827 5.827 12 C -0.167 4.167 13 S 0.110 5.890 14 C -0.241 4.241 15 C -0.144 4.144 16 C 0.041 3.959 17 O -0.475 6.475 18 H 0.289 0.711 19 H 0.326 0.674 20 H 0.303 0.697 21 H 0.158 0.842 22 H 0.135 0.865 23 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -9.963 -1.165 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.170 4.170 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.645 4.645 8 H 0.065 0.935 9 C 0.159 3.841 10 H 0.070 0.930 11 N -0.355 5.355 12 C -0.288 4.288 13 S 0.371 5.629 14 C -0.376 4.376 15 C -0.176 4.176 16 C -0.014 4.014 17 O -0.282 6.282 18 H 0.101 0.899 19 H 0.139 0.861 20 H 0.114 0.886 21 H 0.176 0.824 22 H 0.152 0.848 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.298 -6.804 -2.288 8.367 hybrid contribution 0.482 -3.462 1.265 3.717 sum 4.780 -10.266 -1.023 11.370 Atomic orbital electron populations 1.70566 1.06784 1.32680 1.42231 1.25647 0.96582 1.01824 0.92977 0.83624 0.74940 0.75592 0.76450 1.20806 1.21581 1.21543 1.21658 0.93465 0.90168 1.59211 0.93460 1.17964 0.86979 0.88672 0.90481 0.92987 1.59484 1.28534 1.42311 1.05139 1.26805 1.03710 1.03081 0.95155 1.84081 1.38902 1.26626 1.13299 1.25238 1.08583 1.05629 0.98138 1.20228 1.00002 1.00249 0.97092 1.17160 1.00017 0.97931 0.86296 1.85028 1.42143 1.71074 1.29953 0.89874 0.86130 0.88631 0.82398 0.84767 0.77438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.51 55.43 0.75 -26.20 14 2 C 0.04 1.14 5.39 -17.82 -0.10 1.05 14 3 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 14 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 14 7 C -0.61 -17.28 8.71 -34.44 -0.30 -17.58 14 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 14 9 C 0.27 6.74 2.61 -70.02 -0.18 6.56 14 10 H 0.05 1.42 7.53 -51.93 -0.39 1.03 14 11 N -0.83 -18.95 7.75 -6.65 -0.05 -19.01 14 12 C -0.17 -3.61 5.35 -35.92 -0.19 -3.80 14 13 S 0.11 1.98 22.66 -107.50 -2.44 -0.45 14 14 C -0.24 -3.80 11.22 29.05 0.33 -3.48 14 15 C -0.14 -2.44 10.17 -41.10 -0.42 -2.86 14 16 C 0.04 0.82 6.69 -41.04 -0.27 0.55 14 17 O -0.47 -9.22 13.04 -20.50 -0.27 -9.48 14 18 H 0.29 8.71 6.39 -40.82 -0.26 8.45 14 19 H 0.33 7.29 8.39 -39.30 -0.33 6.96 14 20 H 0.30 6.04 9.06 -39.29 -0.36 5.68 14 21 H 0.16 1.96 8.06 -52.49 -0.42 1.53 14 22 H 0.13 1.92 8.06 -52.49 -0.42 1.50 14 23 H 0.37 5.29 9.07 45.56 0.41 5.70 14 LS Contribution 222.62 15.07 3.35 3.35 Total: -1.00 -32.09 222.62 -5.84 -37.94 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.97 Total: 12.76 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.14 Total: -19.57 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.70 Total: -45.20 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.27 Total: -9.48 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.44 Total: -0.45 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -32.09 -5.84 -37.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600576.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.827 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds