Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48497 * 109.47002 * 275.38970 * 3 2 1 5 5 H 1.48499 * 109.47060 * 35.38400 * 3 2 1 6 6 H 1.48495 * 109.47561 * 155.38759 * 3 2 1 7 7 C 1.40027 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99834 * 341.57026 * 7 2 1 9 9 C 1.41555 * 120.00460 * 161.56215 * 7 2 1 10 10 C 1.40882 * 120.98837 * 330.94262 * 9 7 2 11 11 C 1.38399 * 118.83814 * 180.25532 * 10 9 7 12 12 O 1.35701 * 119.56049 * 179.70020 * 11 10 9 13 13 N 1.32420 * 120.88657 * 359.44596 * 11 10 9 14 14 C 1.32169 * 122.22529 * 0.54825 * 13 11 10 15 15 Cl 1.73594 * 119.47346 * 179.72806 * 14 13 11 16 16 C 1.37793 * 121.05265 * 359.74596 * 14 13 11 17 17 H 0.96998 * 119.99918 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.58468 * 359.97172 * 10 9 7 19 19 H 0.96702 * 114.00201 * 89.99389 * 12 11 10 20 20 H 1.08001 * 120.50924 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3751 2.1121 -1.3939 5 1 1.5005 2.6171 0.8107 6 1 3.5913 1.4100 0.5831 7 6 2.0076 -1.2126 0.0005 8 1 1.5091 -2.1239 0.2967 9 6 3.3686 -1.2443 -0.3871 10 6 3.8820 -0.3115 -1.3097 11 6 5.2184 -0.3866 -1.6614 12 8 5.7268 0.5007 -2.5534 13 7 6.0089 -1.3096 -1.1354 14 6 5.5684 -2.2031 -0.2668 15 17 6.6660 -3.3862 0.3727 16 6 4.2516 -2.2106 0.1391 17 1 -0.4850 0.8400 -0.0004 18 1 3.2428 0.4461 -1.7385 19 1 6.0791 1.3059 -2.1500 20 1 3.9009 -2.9450 0.8491 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684365.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -30.778085 kcal Electronic energy + Delta-G solvation = -10319.921625 eV Core-core repulsion = 8121.302899 eV Total energy + Delta-G solvation = -2198.618726 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 199.014 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.16671 -36.48048 -35.65635 -34.10647 -31.60858 -28.99813 -26.25722 -22.52741 -21.48008 -18.50947 -16.97159 -16.22731 -15.45002 -14.84166 -14.55909 -13.83152 -13.19044 -12.84144 -11.98124 -11.49567 -11.29541 -11.10427 -10.90894 -10.59912 -10.41112 -10.11069 -9.60975 -8.57425 -8.41645 -7.84022 -7.28829 -4.97369 2.01007 2.28588 2.64705 2.91744 3.01337 3.08994 3.72451 4.10744 4.67936 5.02180 6.04360 6.16986 6.23213 6.46864 6.65755 6.83459 7.25672 7.41123 7.91803 8.08842 8.30300 8.39937 8.88147 9.71077 Molecular weight = 199.01amu Principal moments of inertia in cm(-1) A = 0.041866 B = 0.013582 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.636274 B = 2061.121629 C = 2547.177199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.121 3.879 10 C -0.299 4.299 11 C 0.340 3.660 12 O -0.492 6.492 13 N -0.594 5.594 14 C 0.218 3.782 15 Cl -0.079 7.079 16 C -0.242 4.242 17 H 0.292 0.708 18 H 0.121 0.879 19 H 0.387 0.613 20 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 1.816 1.116 4.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.452 4.452 8 H 0.120 0.880 9 C 0.113 3.887 10 C -0.323 4.323 11 C 0.166 3.834 12 O -0.298 6.298 13 N -0.321 5.321 14 C 0.059 3.941 15 Cl -0.051 7.051 16 C -0.267 4.267 17 H 0.103 0.897 18 H 0.138 0.862 19 H 0.242 0.758 20 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.985 1.394 0.486 5.199 hybrid contribution -0.341 0.997 0.514 1.172 sum 4.644 2.391 1.001 5.318 Atomic orbital electron populations 1.69625 1.08234 1.31154 1.31458 1.26254 0.94845 1.02147 0.90503 0.86234 0.81176 0.79234 0.79348 1.18909 1.21110 1.16920 1.19550 0.92169 0.96683 1.36836 0.88036 1.17681 0.93046 0.89296 0.88677 1.21880 0.96001 1.08164 1.06236 1.18410 0.87770 0.88999 0.88269 1.84731 1.81266 1.30952 1.32807 1.65879 1.40931 1.09067 1.16195 1.20683 0.87710 0.91345 0.94357 1.98311 1.66389 1.55730 1.84713 1.21622 0.91069 1.06535 1.07438 0.89664 0.86174 0.75798 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 13.92 55.55 0.77 -18.30 14 2 C 0.09 2.07 5.42 -17.35 -0.09 1.97 14 3 Si 0.91 19.05 24.54 -169.99 -4.17 14.88 14 4 H -0.26 -5.34 6.71 56.52 0.38 -4.96 14 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 6 H -0.25 -5.27 6.85 56.52 0.39 -4.88 14 7 C -0.42 -10.59 9.63 -37.65 -0.36 -10.96 14 8 H 0.10 2.62 8.06 -52.48 -0.42 2.19 14 9 C 0.12 2.95 5.14 -106.56 -0.55 2.40 14 10 C -0.30 -7.06 7.22 -38.52 -0.28 -7.34 14 11 C 0.34 7.80 7.73 -17.24 -0.13 7.66 14 12 O -0.49 -9.73 13.55 -18.81 -0.25 -9.99 14 13 N -0.59 -14.00 10.34 -10.60 -0.11 -14.11 14 14 C 0.22 4.90 7.26 -17.57 -0.13 4.77 14 15 Cl -0.08 -1.50 29.09 -51.86 -1.51 -3.01 14 16 C -0.24 -5.53 9.65 -38.67 -0.37 -5.90 14 17 H 0.29 6.38 8.29 -40.82 -0.34 6.04 14 18 H 0.12 2.77 4.76 -52.49 -0.25 2.52 14 19 H 0.39 5.53 9.06 45.56 0.41 5.95 14 20 H 0.12 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 202.40 15.07 3.05 3.05 Total: -1.00 -27.10 202.40 -3.99 -31.10 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 0.15 Total: 3.78 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.92 Total: -7.39 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.66 Total: -32.41 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.25 Total: -9.99 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.88 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.51 Total: -3.01 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -27.10 -3.99 -31.10 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684365.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.317 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds