Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47523 * 2 1 4 4 C 1.46848 * 110.99730 * 45.78952 * 3 2 1 5 5 C 1.53043 * 109.52033 * 185.84074 * 4 3 2 6 6 C 1.53125 * 109.31086 * 300.84337 * 5 4 3 7 7 C 1.53125 * 109.15824 * 57.59619 * 6 5 4 8 8 H 1.09004 * 109.50123 * 62.36071 * 7 6 5 9 9 N 1.46499 * 109.50281 * 182.44399 * 7 6 5 10 10 C 1.36939 * 119.99933 * 275.19654 * 9 7 6 11 11 H 1.08001 * 119.99700 * 359.72658 * 10 9 7 12 12 C 1.38810 * 120.00095 * 179.71972 * 10 9 7 13 13 N 1.31624 * 119.99740 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47144 * 90.00258 * 14 12 10 16 16 H 1.48500 * 109.47140 * 210.00775 * 14 12 10 17 17 H 1.48502 * 109.46967 * 330.00206 * 14 12 10 18 18 C 1.46842 * 111.00191 * 170.00525 * 3 2 1 19 19 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46754 * 299.99882 * 1 2 3 21 21 H 1.08995 * 109.47115 * 59.99909 * 1 2 3 22 22 H 1.09000 * 109.46998 * 239.99624 * 2 1 3 23 23 H 1.09004 * 109.47187 * 120.00268 * 2 1 3 24 24 H 1.08997 * 109.46381 * 305.85501 * 4 3 2 25 25 H 1.08994 * 109.46235 * 65.82943 * 4 3 2 26 26 H 1.09006 * 109.50142 * 60.76459 * 5 4 3 27 27 H 1.08995 * 109.49819 * 180.87899 * 5 4 3 28 28 H 1.08998 * 109.49179 * 297.71137 * 6 5 4 29 29 H 1.08998 * 109.55026 * 177.52065 * 6 5 4 30 30 H 0.97001 * 119.99790 * 94.91627 * 9 7 6 31 31 H 0.96998 * 119.99409 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46578 * 54.14068 * 18 3 2 33 33 H 1.09004 * 109.45410 * 294.16990 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.2939 2.1997 0.9827 5 6 1.7266 3.6621 0.8540 6 6 3.2357 3.7664 1.0915 7 6 3.9657 2.8703 0.0870 8 1 3.7652 3.2203 -0.9256 9 7 5.4069 2.9192 0.3451 10 6 6.1654 3.9238 -0.1940 11 1 5.7017 4.6776 -0.8131 12 6 7.5300 3.9734 0.0553 13 7 8.0950 3.0545 0.8096 14 14 8.5647 5.3434 -0.6807 15 1 8.6032 6.4935 0.2579 16 1 9.9454 4.8495 -0.9154 17 1 7.9681 5.7763 -1.9699 18 6 3.4680 1.4310 0.2379 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 0.2224 2.1206 0.7995 25 1 1.5179 1.8419 1.9875 26 1 1.4903 4.0248 -0.1464 27 1 1.1992 4.2640 1.5939 28 1 3.4677 3.4409 2.1056 29 1 3.5555 4.7997 0.9574 30 1 5.8232 2.2422 0.9013 31 1 9.0486 3.0890 0.9835 32 1 3.9755 0.7935 -0.4860 33 1 3.6817 1.0767 1.2464 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258701311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -13.912325 kcal Electronic energy + Delta-G solvation = -13045.311431 eV Core-core repulsion = 10911.932840 eV Total energy + Delta-G solvation = -2133.378590 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14818 -36.72328 -34.57603 -32.82474 -31.17341 -29.34699 -26.10948 -24.98187 -23.60246 -21.72725 -20.70823 -19.16800 -17.28235 -16.51047 -15.99986 -15.86573 -15.39248 -14.96298 -14.65049 -14.55354 -14.08617 -13.40363 -13.04038 -12.89201 -12.67400 -12.55109 -12.35961 -12.14422 -12.01679 -11.81597 -11.71284 -11.40863 -11.15538 -10.86307 -9.24822 -9.02623 -7.95301 -5.24461 1.46807 1.48840 1.57438 2.53981 2.94495 3.37901 3.88769 3.97811 4.07490 4.21878 4.27642 4.33256 4.44808 4.55220 4.62974 4.65919 4.79301 4.86737 4.91896 5.10975 5.13002 5.17340 5.19005 5.33443 5.44940 5.49628 5.58605 6.11548 6.24324 6.28744 7.32321 8.06981 8.31392 9.28597 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.066035 B = 0.007810 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.914064 B = 3584.095815 C = 3799.827392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.543 5.543 4 C 0.052 3.948 5 C -0.108 4.108 6 C -0.130 4.130 7 C 0.178 3.822 8 H 0.042 0.958 9 N -0.738 5.738 10 C -0.238 4.238 11 H 0.074 0.926 12 C -0.077 4.077 13 N -0.972 5.972 14 Si 0.975 3.025 15 H -0.286 1.286 16 H -0.295 1.295 17 H -0.269 1.269 18 C 0.067 3.933 19 H 0.074 0.926 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.028 0.972 24 H 0.104 0.896 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.371 0.629 31 H 0.251 0.749 32 H 0.063 0.937 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -3.472 -0.322 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.268 5.268 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.170 4.170 7 C 0.070 3.930 8 H 0.060 0.940 9 N -0.378 5.378 10 C -0.370 4.370 11 H 0.092 0.908 12 C -0.269 4.269 13 N -0.623 5.623 14 Si 0.803 3.197 15 H -0.214 1.214 16 H -0.221 1.221 17 H -0.194 1.194 18 C -0.062 4.062 19 H 0.093 0.907 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.046 0.954 24 H 0.122 0.878 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.202 0.798 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -15.869 -3.140 -0.911 16.203 hybrid contribution 1.490 0.044 0.815 1.699 sum -14.380 -3.096 -0.096 14.709 Atomic orbital electron populations 1.21892 0.92989 1.02882 1.02683 1.22182 0.97263 0.88119 1.00593 1.61972 1.02681 1.11751 1.50430 1.22285 0.99568 0.93024 0.92671 1.21559 0.94277 0.96253 1.02517 1.22142 0.96024 0.99814 0.99030 1.20335 0.82710 0.93398 0.96590 0.93998 1.42576 1.03376 1.31571 1.60271 1.19605 0.90322 1.03787 1.23267 0.90791 1.25575 0.98050 1.01493 1.01774 1.69829 1.10638 1.37598 1.44247 0.85120 0.77756 0.78523 0.78272 1.21358 1.22106 1.19407 1.22082 0.88520 0.97059 0.98533 0.90675 0.91779 0.91754 0.90884 0.95401 0.87784 0.95589 0.91390 0.89906 0.94137 0.93821 0.79801 0.94015 0.91892 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.16 71.98 0.66 -1.89 16 2 C 0.05 1.09 5.99 86.30 0.52 1.61 16 3 N -0.54 -15.96 4.81 -896.37 -4.31 -20.27 16 4 C 0.05 1.33 4.85 86.33 0.42 1.75 16 5 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 6 C -0.13 -4.88 5.59 30.68 0.17 -4.71 16 7 C 0.18 7.58 2.93 45.05 0.13 7.71 16 8 H 0.04 1.88 8.08 -2.38 -0.02 1.86 16 9 N -0.74 -39.05 5.13 -322.68 -1.65 -40.71 16 10 C -0.24 -13.67 9.93 84.03 0.83 -12.83 16 11 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 12 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 13 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 14 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 18 C 0.07 2.45 4.90 86.33 0.42 2.87 16 19 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 20 H 0.06 1.03 6.21 -2.39 -0.01 1.02 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.03 0.67 8.08 -2.38 -0.02 0.65 16 24 H 0.10 2.11 5.81 -2.39 -0.01 2.09 16 25 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.37 20.96 7.80 -92.71 -0.72 20.23 16 31 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 33 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -64.22 262.32 0.50 -63.72 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.34 Total: 21.12 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.81 Total: -12.39 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -5.68 Total: -121.55 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -64.22 0.50 -63.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258701311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.809 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds