Wall clock time and date at job start Mon Mar 30 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00307 * 2 1 4 4 H 1.48504 * 109.47061 * 269.99994 * 3 2 1 5 5 H 1.48503 * 109.46945 * 29.99657 * 3 2 1 6 6 H 1.48493 * 109.46967 * 149.99807 * 3 2 1 7 7 C 1.37883 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00193 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99559 * 180.02562 * 7 2 1 10 10 F 1.39897 * 109.47403 * 60.00502 * 9 7 2 11 11 F 1.39911 * 109.47357 * 300.00068 * 9 7 2 12 12 C 1.50703 * 109.47298 * 180.02562 * 9 7 2 13 13 C 1.38223 * 119.62264 * 180.02562 * 12 9 7 14 14 C 1.38628 * 119.16031 * 179.97438 * 13 12 9 15 15 C 1.38672 * 118.42475 * 359.97438 * 14 13 12 16 16 C 1.38186 * 119.15778 * 0.02562 * 15 14 13 17 17 N 1.31856 * 119.61279 * 359.97438 * 12 9 7 18 18 H 0.97000 * 119.99549 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.41821 * 359.95030 * 13 12 9 20 20 H 1.08006 * 120.78822 * 180.02562 * 14 13 12 21 21 H 1.07993 * 120.42192 * 179.97438 * 15 14 13 22 22 H 1.08001 * 119.60956 * 180.27218 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 9 3.9774 -0.5345 1.1434 11 9 3.9783 -0.5349 -1.1412 12 6 4.0139 -2.6150 0.0010 13 6 5.3745 -2.8586 0.0020 14 6 5.8260 -4.1692 0.0024 15 6 4.8880 -5.1906 0.0024 16 6 3.5438 -4.8702 0.0013 17 7 3.1503 -3.6114 0.0010 18 1 -0.4849 0.8401 -0.0004 19 1 6.0768 -2.0382 0.0021 20 1 6.8833 -4.3897 0.0036 21 1 5.2040 -6.2232 0.0023 22 1 2.8070 -5.6598 0.0057 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259001578.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:23 Heat of formation + Delta-G solvation = -72.753074 kcal Electronic energy + Delta-G solvation = -12523.053192 eV Core-core repulsion = 9906.650708 eV Total energy + Delta-G solvation = -2616.402483 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 199.050 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.73753 -47.60155 -40.96583 -35.05850 -33.56177 -32.85350 -29.50643 -25.78036 -24.36703 -22.57066 -19.61852 -18.67121 -18.05573 -17.36767 -16.86249 -16.68868 -15.66404 -15.49893 -14.94747 -14.70533 -14.52897 -14.06878 -14.03300 -13.70154 -12.85081 -12.71370 -12.60552 -11.69940 -11.34809 -11.01311 -10.84771 -10.13716 -10.13043 -8.53992 -6.78720 0.04230 0.39961 1.28637 1.29431 1.43726 2.20537 2.72156 2.75174 2.90098 3.70991 3.83205 4.02642 4.17233 4.20917 4.57032 4.75608 4.82419 4.82631 5.18065 5.20696 5.75598 5.97277 6.56542 6.98983 7.14372 8.58728 Molecular weight = 199.05amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.013600 C = 0.011814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.653152 B = 2058.323253 C = 2369.470812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.044 3.956 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.240 1.240 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.405 3.595 10 F -0.219 7.219 11 F -0.221 7.221 12 C 0.065 3.935 13 C -0.161 4.161 14 C -0.071 4.071 15 C -0.149 4.149 16 C 0.075 3.925 17 N -0.483 5.483 18 H 0.277 0.723 19 H 0.143 0.857 20 H 0.183 0.817 21 H 0.186 0.814 22 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.573 -8.265 0.092 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.160 4.160 3 Si 0.749 3.251 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.163 1.163 7 C -0.616 4.616 8 H 0.108 0.892 9 C 0.368 3.632 10 F -0.201 7.201 11 F -0.203 7.203 12 C -0.072 4.072 13 C -0.181 4.181 14 C -0.096 4.096 15 C -0.168 4.168 16 C -0.083 4.083 17 N -0.192 5.192 18 H 0.087 0.913 19 H 0.161 0.839 20 H 0.201 0.799 21 H 0.203 0.797 22 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.525 -7.928 0.099 13.989 hybrid contribution 0.604 0.965 -0.051 1.140 sum 12.129 -6.963 0.048 13.986 Atomic orbital electron populations 1.69981 1.07637 1.29086 1.47676 1.25779 0.95828 1.02854 0.91513 0.86245 0.80547 0.78876 0.79446 1.19432 1.20221 1.16307 1.21610 0.88023 0.96615 1.55339 0.89154 1.17373 0.92585 0.82893 0.70332 1.92887 1.91038 1.83206 1.52946 1.92801 1.91006 1.83236 1.53234 1.21213 0.91391 0.94035 1.00591 1.22181 0.94768 1.00561 1.00592 1.22050 1.02641 0.90417 0.94537 1.22708 0.93035 1.02622 0.98409 1.23513 0.97020 0.92315 0.95419 1.67345 1.40462 1.01148 1.10284 0.91331 0.83895 0.79949 0.79710 0.80150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.29 13.96 21.45 0.30 -57.00 14 2 C 0.04 2.70 5.47 84.65 0.46 3.16 14 3 Si 0.93 47.29 25.99 68.60 1.78 49.07 14 4 H -0.27 -13.37 7.11 99.48 0.71 -12.67 14 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 14 6 H -0.24 -11.97 5.49 99.48 0.55 -11.42 14 7 C -0.58 -35.56 9.00 25.60 0.23 -35.32 14 8 H 0.09 5.99 6.81 -2.91 -0.02 5.97 14 9 C 0.40 21.55 1.45 29.10 0.04 21.59 14 10 F -0.22 -11.51 14.10 44.97 0.63 -10.87 14 11 F -0.22 -11.55 14.94 44.97 0.67 -10.87 14 12 C 0.07 2.97 6.17 42.55 0.26 3.23 14 13 C -0.16 -5.47 9.63 22.36 0.22 -5.26 14 14 C -0.07 -1.66 10.18 22.47 0.23 -1.44 14 15 C -0.15 -3.29 10.11 22.36 0.23 -3.06 14 16 C 0.08 2.33 11.18 84.67 0.95 3.28 14 17 N -0.48 -21.53 8.45 -183.88 -1.55 -23.08 14 18 H 0.28 16.09 8.31 -92.71 -0.77 15.32 14 19 H 0.14 4.41 8.06 -2.91 -0.02 4.39 14 20 H 0.18 2.47 8.06 -2.91 -0.02 2.45 14 21 H 0.19 2.16 8.06 -2.91 -0.02 2.14 14 22 H 0.18 4.35 8.06 -2.91 -0.02 4.32 14 Total: -1.00 -74.24 207.67 5.52 -68.72 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 1.08 Total: -2.14 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 2.61 Total: -13.82 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.26 Total: -80.07 kcal Atomic # 9 Polarization: -23.05 SS G_CDS: 1.31 Total: -21.75 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.78 Total: 49.07 kcal Total: -74.24 5.52 -68.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259001578.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.037 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds