Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31789 * 122.75159 * 2 1 4 4 C 1.29022 * 117.12388 * 180.33453 * 3 2 1 5 5 S 1.70977 * 110.16929 * 359.71342 * 4 3 2 6 6 C 1.33634 * 122.75079 * 179.79859 * 2 1 3 7 7 C 1.50703 * 126.03895 * 359.97362 * 6 2 1 8 8 H 1.08998 * 109.47145 * 14.71694 * 7 6 2 9 9 O 1.42896 * 109.47115 * 134.71839 * 7 6 2 10 10 C 1.50700 * 109.47148 * 254.71673 * 7 6 2 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 H 1.09000 * 109.46998 * 270.20197 * 1 2 3 19 19 H 1.08994 * 109.47049 * 30.20000 * 1 2 3 20 20 H 1.09002 * 109.47010 * 150.20334 * 1 2 3 21 21 H 1.08001 * 124.91125 * 179.67814 * 4 3 2 22 22 H 0.96699 * 114.00348 * 60.00095 * 9 7 6 23 23 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0067 5 16 3.9332 -0.6731 -0.0060 6 6 2.2299 -1.1239 0.0040 7 6 1.6847 -2.5288 0.0095 8 1 0.6265 -2.5089 -0.2513 9 8 2.3957 -3.3194 -0.9452 10 6 1.8526 -3.1275 1.3822 11 1 2.3082 -2.5483 2.1718 12 6 1.4237 -4.4141 1.6304 13 7 0.8685 -5.1191 0.6690 14 14 1.6312 -5.1559 3.3322 15 1 2.9451 -5.8430 3.4158 16 1 1.5700 -4.0788 4.3525 17 1 0.5435 -6.1358 3.5811 18 1 -0.3633 0.0036 1.0277 19 1 -0.3633 0.8881 -0.5169 20 1 -0.3633 -0.8918 -0.5107 21 1 4.2059 1.8026 -0.0125 22 1 3.3456 -3.3814 -0.7752 23 1 0.7604 -4.7338 -0.2146 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259578127.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -42.784184 kcal Electronic energy + Delta-G solvation = -10684.487494 eV Core-core repulsion = 8623.224946 eV Total energy + Delta-G solvation = -2061.262548 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.81888 -38.10484 -34.39530 -33.15916 -29.95845 -27.31266 -25.77184 -24.10202 -20.18592 -19.56937 -18.94966 -17.49829 -16.20385 -15.82776 -15.70091 -15.07372 -14.53410 -14.43053 -14.14804 -13.50501 -13.36388 -12.66527 -12.38801 -12.17362 -11.95706 -11.86028 -10.77243 -10.70238 -10.43331 -10.06581 -9.58654 -8.66384 -6.54302 -0.15052 0.47975 0.87526 1.52999 1.60372 1.78757 1.82257 2.52879 3.10177 3.35849 3.84262 4.11453 4.28035 4.35296 4.64714 4.71883 4.90136 5.21947 5.33258 5.69960 6.03367 6.48678 6.74181 6.92929 7.38498 8.69863 Molecular weight = 199.04amu Principal moments of inertia in cm(-1) A = 0.044258 B = 0.012117 C = 0.011684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.501736 B = 2310.156061 C = 2395.908237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 N -0.488 5.488 4 C 0.009 3.991 5 S 0.139 5.861 6 C -0.226 4.226 7 C 0.281 3.719 8 H 0.052 0.948 9 O -0.584 6.584 10 C -0.646 4.646 11 H 0.046 0.954 12 C -0.008 4.008 13 N -0.913 5.913 14 Si 1.117 2.883 15 H -0.270 1.270 16 H -0.274 1.274 17 H -0.281 1.281 18 H 0.073 0.927 19 H 0.086 0.914 20 H 0.064 0.936 21 H 0.240 0.760 22 H 0.363 0.637 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 8.729 0.285 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 N -0.202 5.202 4 C -0.289 4.289 5 S 0.392 5.608 6 C -0.348 4.348 7 C 0.222 3.778 8 H 0.070 0.930 9 O -0.389 6.389 10 C -0.684 4.684 11 H 0.065 0.935 12 C -0.211 4.211 13 N -0.548 5.548 14 Si 0.938 3.062 15 H -0.196 1.196 16 H -0.199 1.199 17 H -0.207 1.207 18 H 0.092 0.908 19 H 0.105 0.895 20 H 0.082 0.918 21 H 0.256 0.744 22 H 0.209 0.791 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.171 7.371 0.879 9.047 hybrid contribution -0.204 1.437 -0.794 1.655 sum 4.968 8.808 0.085 10.113 Atomic orbital electron populations 1.20279 0.86699 1.02922 1.02926 1.20419 0.99178 0.86338 1.04948 1.66166 1.06148 1.31266 1.16632 1.28891 0.95176 1.00717 1.04115 1.83519 1.05991 1.03417 1.67891 1.26933 0.96913 1.02240 1.08674 1.17923 0.91095 0.80384 0.88448 0.93017 1.86496 1.23643 1.74178 1.54625 1.22600 1.46832 1.02408 0.96535 0.93549 1.27253 0.91573 0.94641 1.07662 1.70761 1.39817 1.39976 1.04280 0.82945 0.77496 0.75534 0.70228 1.19584 1.19906 1.20657 0.90809 0.89501 0.91757 0.74443 0.79067 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.47 10.02 71.24 0.71 -1.76 14 2 C 0.02 0.86 6.74 41.52 0.28 1.14 14 3 N -0.49 -17.72 10.53 -191.55 -2.02 -19.74 14 4 C 0.01 0.26 12.23 130.66 1.60 1.86 14 5 S 0.14 4.66 22.75 -56.49 -1.29 3.38 14 6 C -0.23 -9.80 5.44 24.64 0.13 -9.66 14 7 C 0.28 14.23 2.75 29.10 0.08 14.31 14 8 H 0.05 2.83 6.27 -2.39 -0.01 2.82 14 9 O -0.58 -29.56 11.99 -148.98 -1.79 -31.35 14 10 C -0.65 -35.27 8.74 25.60 0.22 -35.04 14 11 H 0.05 2.54 7.74 -2.91 -0.02 2.52 14 12 C -0.01 -0.45 5.40 84.65 0.46 0.00 14 13 N -0.91 -54.67 13.53 21.45 0.29 -54.38 14 14 Si 1.12 48.69 29.90 68.60 2.05 50.74 14 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 14 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 14 18 H 0.07 2.57 8.14 -2.39 -0.02 2.55 14 19 H 0.09 2.66 8.14 -2.39 -0.02 2.64 14 20 H 0.06 2.39 6.61 -2.39 -0.02 2.38 14 21 H 0.24 4.49 8.06 -2.91 -0.02 4.47 14 22 H 0.36 16.48 8.60 -74.06 -0.64 15.85 14 23 H 0.27 16.60 6.47 -92.70 -0.60 16.00 14 Total: -1.00 -65.14 221.38 1.51 -63.63 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.77 Total: 16.88 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.49 Total: -29.16 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.73 Total: -74.12 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.79 Total: -31.35 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.29 Total: 3.38 kcal Total: -65.14 1.51 -63.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259578127.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.849 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds