Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48105 * 110.99910 * 2 1 4 4 C 1.46137 * 112.19908 * 156.47276 * 3 2 1 5 5 C 1.54256 * 111.89427 * 60.86752 * 4 3 2 6 6 H 1.09006 * 109.61021 * 41.31908 * 5 4 3 7 7 C 1.50700 * 109.61083 * 161.65201 * 5 4 3 8 8 H 1.08000 * 119.99639 * 35.35224 * 7 5 4 9 9 C 1.37872 * 120.00262 * 215.35478 * 7 5 4 10 10 N 1.31515 * 120.00046 * 353.86199 * 9 7 5 11 11 Si 1.86804 * 119.99919 * 173.86664 * 9 7 5 12 12 H 1.48505 * 109.47014 * 269.99992 * 11 9 7 13 13 H 1.48499 * 109.47142 * 149.99723 * 11 9 7 14 14 H 1.48498 * 109.47174 * 29.99941 * 11 9 7 15 15 N 1.44259 * 108.65133 * 281.40195 * 5 4 3 16 16 C 1.46892 * 110.99966 * 219.84754 * 15 5 4 17 17 C 1.48196 * 114.27733 * 93.38688 * 15 5 4 18 18 C 1.44259 * 111.00160 * 237.37014 * 2 1 3 19 19 H 1.08995 * 109.47475 * 59.99551 * 1 2 3 20 20 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47010 * 299.99555 * 1 2 3 22 22 H 1.09005 * 108.93272 * 35.77672 * 3 2 1 23 23 H 1.08993 * 108.94001 * 277.18040 * 3 2 1 24 24 H 1.08996 * 108.99831 * 300.24412 * 4 3 2 25 25 H 1.09001 * 108.93156 * 181.44640 * 4 3 2 26 26 H 0.96996 * 120.00081 * 354.52860 * 10 9 7 27 27 H 1.09003 * 109.47277 * 64.85978 * 16 15 5 28 28 H 1.09002 * 109.47131 * 184.85240 * 16 15 5 29 29 H 1.09005 * 109.47526 * 304.85598 * 16 15 5 30 30 H 1.09001 * 108.82359 * 197.28717 * 17 15 5 31 31 H 1.09005 * 108.73798 * 78.92808 * 17 15 5 32 32 H 1.09003 * 108.86252 * 337.91810 * 18 2 1 33 33 H 1.08990 * 108.86892 * 96.34111 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3827 0.0000 4 6 3.3557 1.4536 0.5401 5 6 4.3496 0.6139 -0.2885 6 1 4.1417 0.7438 -1.3506 7 6 5.7584 1.0585 0.0091 8 1 6.0248 1.3773 1.0060 9 6 6.7072 1.0584 -0.9913 10 7 6.4173 0.5580 -2.1725 11 14 8.4045 1.7689 -0.6689 12 1 8.4081 3.2150 -1.0067 13 1 9.4047 1.0619 -1.5084 14 1 8.7499 1.5947 0.7648 15 7 4.1937 -0.7742 0.0723 16 6 5.4967 -1.4480 0.1476 17 6 3.2556 -1.5271 -0.7934 18 6 1.9860 -0.7262 -1.1342 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.3455 2.0126 0.6028 23 1 2.0062 1.7591 -1.0228 24 1 3.3488 1.0850 1.5658 25 1 3.6828 2.4934 0.5392 26 1 5.5651 0.1179 -2.3169 27 1 6.0834 -1.0151 0.9578 28 1 5.3457 -2.5109 0.3363 29 1 6.0280 -1.3183 -0.7953 30 1 2.9657 -2.4453 -0.2826 31 1 3.7666 -1.7872 -1.7204 32 1 1.2199 -1.4149 -1.4907 33 1 2.2186 -0.0184 -1.9297 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = -3.593735 kcal Electronic energy + Delta-G solvation = -13768.821046 eV Core-core repulsion = 11635.889903 eV Total energy + Delta-G solvation = -2132.931143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34066 -37.35375 -34.50730 -33.40264 -30.33975 -28.27371 -26.48288 -25.17400 -24.41954 -21.50613 -21.00573 -18.62589 -17.15176 -16.63723 -16.01708 -15.98967 -15.65827 -14.81836 -14.66490 -14.23875 -14.10861 -13.66583 -13.21173 -12.88292 -12.70114 -12.48187 -12.26647 -12.21518 -11.96608 -11.77973 -11.55034 -11.35210 -10.53896 -10.48253 -9.23824 -8.71858 -8.58148 -6.31261 1.52131 1.59260 1.77434 2.54857 2.93375 3.13422 3.56138 4.00028 4.14525 4.20855 4.29916 4.44645 4.53981 4.63857 4.72496 4.77350 4.80746 4.89319 4.96270 5.00806 5.04011 5.17175 5.27980 5.43364 5.59013 5.84781 6.12938 6.21185 6.29395 6.49472 6.76553 6.96766 7.45907 8.74058 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054349 B = 0.011566 C = 0.010645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.061980 B = 2420.273885 C = 2629.639670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.538 5.538 3 C 0.070 3.930 4 C -0.093 4.093 5 C 0.203 3.797 6 H -0.023 1.023 7 C -0.593 4.593 8 H 0.044 0.956 9 C -0.022 4.022 10 N -0.933 5.933 11 Si 1.110 2.890 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.271 1.271 15 N -0.547 5.547 16 C 0.067 3.933 17 C 0.068 3.932 18 C 0.067 3.933 19 H 0.025 0.975 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.013 0.987 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.007 0.993 30 H 0.074 0.926 31 H 0.005 0.995 32 H 0.093 0.907 33 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 -1.308 3.141 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.262 5.262 3 C -0.057 4.057 4 C -0.132 4.132 5 C 0.096 3.904 6 H -0.006 1.006 7 C -0.632 4.632 8 H 0.063 0.937 9 C -0.221 4.221 10 N -0.571 5.571 11 Si 0.933 3.067 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.195 1.195 15 N -0.273 5.273 16 C -0.081 4.081 17 C -0.061 4.061 18 C -0.063 4.063 19 H 0.044 0.956 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.023 0.977 32 H 0.111 0.889 33 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -7.352 -1.184 3.296 8.143 hybrid contribution -1.179 0.027 -1.094 1.609 sum -8.530 -1.157 2.202 8.886 Atomic orbital electron populations 1.22523 0.85504 1.02839 1.01025 1.61418 1.08510 1.13636 1.42630 1.21065 0.96858 0.89181 0.98579 1.20454 0.94069 0.98535 1.00140 1.19019 0.94115 0.85620 0.91609 1.00568 1.22243 0.96079 1.46761 0.98122 0.93736 1.27111 1.07235 0.95225 0.92492 1.70917 1.25050 1.36689 1.24408 0.83015 0.71286 0.76345 0.76070 1.20052 1.21261 1.19540 1.60991 1.10384 1.03072 1.52841 1.21833 0.90980 0.95455 0.99850 1.22409 0.92801 0.97127 0.93730 1.21802 0.96492 0.97096 0.90861 0.95594 0.90138 0.90371 0.89872 0.96851 0.92751 0.93071 0.93567 0.93126 0.93392 0.97490 0.90764 0.97716 0.88901 0.97142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.24 127.69 1.18 1.88 16 2 N -0.54 -18.27 4.66 -937.14 -4.37 -22.64 16 3 C 0.07 2.57 5.01 83.96 0.42 2.99 16 4 C -0.09 -4.11 5.05 28.91 0.15 -3.96 16 5 C 0.20 10.44 1.71 45.09 0.08 10.51 16 6 H -0.02 -1.34 5.42 -2.38 -0.01 -1.36 16 7 C -0.59 -33.05 5.99 25.60 0.15 -32.90 16 8 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 9 C -0.02 -1.23 4.53 84.65 0.38 -0.85 16 10 N -0.93 -56.41 12.71 21.45 0.27 -56.13 16 11 Si 1.11 50.21 29.91 68.60 2.05 52.27 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 N -0.55 -25.98 4.40 -899.99 -3.96 -29.94 16 16 C 0.07 3.23 8.41 127.69 1.07 4.30 16 17 C 0.07 2.76 5.71 86.37 0.49 3.25 16 18 C 0.07 2.38 5.13 87.11 0.45 2.82 16 19 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 20 H 0.08 1.70 7.97 -2.39 -0.02 1.68 16 21 H 0.08 1.70 8.06 -2.39 -0.02 1.68 16 22 H 0.08 2.55 7.80 -2.38 -0.02 2.53 16 23 H 0.01 0.51 7.38 -2.39 -0.02 0.50 16 24 H 0.05 2.45 8.12 -2.39 -0.02 2.43 16 25 H 0.05 2.26 7.99 -2.39 -0.02 2.24 16 26 H 0.25 15.73 6.24 -92.71 -0.58 15.16 16 27 H 0.05 2.53 7.05 -2.39 -0.02 2.51 16 28 H 0.05 1.99 8.04 -2.39 -0.02 1.98 16 29 H 0.01 0.36 5.68 -2.38 -0.01 0.34 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.00 0.20 8.04 -2.38 -0.02 0.18 16 32 H 0.09 2.64 7.49 -2.39 -0.02 2.62 16 33 H 0.01 0.41 6.55 -2.39 -0.02 0.40 16 Total: -1.00 -63.42 249.75 -0.37 -63.79 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.25 Total: 4.60 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.38 Total: -11.95 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -8.05 Total: -108.71 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.27 kcal Total: -63.42 -0.37 -63.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.199 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds