Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.40092 * 111.00215 * 2 1 4 4 C 1.54507 * 111.50568 * 188.15511 * 3 2 1 5 5 C 1.50748 * 108.94893 * 283.99309 * 4 3 2 6 6 H 1.08997 * 108.78559 * 331.75298 * 5 4 3 7 7 C 1.50700 * 108.78924 * 213.54307 * 5 4 3 8 8 H 1.08008 * 119.99839 * 274.71060 * 7 5 4 9 9 C 1.37872 * 120.00380 * 94.70207 * 7 5 4 10 10 N 1.31517 * 120.00293 * 185.36579 * 9 7 5 11 11 Si 1.86803 * 119.99835 * 5.37256 * 9 7 5 12 12 H 1.48497 * 109.47178 * 84.91980 * 11 9 7 13 13 H 1.48502 * 109.46978 * 204.91936 * 11 9 7 14 14 H 1.48495 * 109.46895 * 324.91551 * 11 9 7 15 15 N 1.48015 * 112.98561 * 92.58256 * 5 4 3 16 16 C 1.46897 * 111.04210 * 192.29761 * 15 5 4 17 17 C 1.47750 * 113.81474 * 318.42271 * 15 5 4 18 18 C 1.47689 * 111.00047 * 128.63866 * 2 1 3 19 19 H 1.09009 * 109.46812 * 287.40925 * 1 2 3 20 20 H 1.08997 * 109.46918 * 47.40170 * 1 2 3 21 21 H 1.08997 * 109.46905 * 167.40666 * 1 2 3 22 22 H 1.09004 * 109.06398 * 308.67386 * 3 2 1 23 23 H 1.08993 * 109.07224 * 67.62843 * 3 2 1 24 24 H 1.09007 * 109.55905 * 43.82763 * 4 3 2 25 25 H 1.08998 * 109.56277 * 164.04102 * 4 3 2 26 26 H 0.96994 * 119.99825 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.47048 * 182.02850 * 16 15 5 28 28 H 1.08996 * 109.47095 * 302.02905 * 16 15 5 29 29 H 1.09002 * 109.46824 * 62.03120 * 16 15 5 30 30 H 1.09003 * 108.98751 * 198.16426 * 17 15 5 31 31 H 1.08996 * 108.99034 * 79.34293 * 17 15 5 32 32 H 1.08994 * 109.73381 * 32.33342 * 18 2 1 33 33 H 1.09001 * 109.73739 * 271.63102 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9711 1.3078 0.0000 4 6 3.5025 1.3266 -0.2039 5 6 4.1728 0.9180 1.0830 6 1 3.5281 1.1937 1.9175 7 6 5.4744 1.6665 1.2114 8 1 6.3676 1.2810 0.7423 9 6 5.5250 2.8436 1.9275 10 7 6.6333 3.5513 1.9521 11 14 4.0194 3.4333 2.8630 12 1 3.9820 2.7862 4.1990 13 1 4.0856 4.9075 3.0286 14 1 2.7939 3.0749 2.1048 15 7 4.4482 -0.5345 1.1554 16 6 4.8260 -0.9325 2.5180 17 6 3.3473 -1.3767 0.6438 18 6 1.9983 -0.8609 1.0770 19 1 -0.3633 0.3075 0.9807 20 1 -0.3633 0.6956 -0.7565 21 1 -0.3633 -1.0029 -0.2241 22 1 1.4977 1.8710 -0.8043 23 1 1.7327 1.7809 0.9526 24 1 3.7740 0.6272 -0.9947 25 1 3.8216 2.3316 -0.4803 26 1 6.6689 4.3792 2.4562 27 1 5.0576 -1.9975 2.5345 28 1 5.7021 -0.3653 2.8324 29 1 3.9987 -0.7300 3.1982 30 1 3.4751 -2.3928 1.0171 31 1 3.3885 -1.3914 -0.4452 32 1 1.3209 -1.6980 1.2454 33 1 2.1029 -0.2810 1.9939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259733858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = 21.083636 kcal Electronic energy + Delta-G solvation = -13766.799517 eV Core-core repulsion = 11634.938465 eV Total energy + Delta-G solvation = -2131.861052 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.11660 -35.47001 -32.94789 -31.31349 -29.02823 -27.13224 -25.07893 -23.45405 -22.85229 -20.26758 -18.60701 -17.00712 -15.67239 -15.28399 -14.98100 -14.18294 -13.97301 -13.47805 -12.87481 -12.63277 -12.42337 -11.87334 -11.72312 -11.52143 -11.37545 -11.00016 -10.91154 -10.77997 -10.39842 -10.13164 -9.78582 -9.63839 -9.04090 -8.54857 -7.91767 -7.08847 -6.06529 -4.03579 3.23718 3.33511 3.33648 4.29469 4.39923 4.84006 5.27269 5.32027 5.45405 5.51966 5.66745 5.76775 5.89090 5.93398 5.98470 6.09443 6.17195 6.20262 6.32590 6.61917 6.70986 6.74784 6.82593 6.96103 7.28247 7.43774 7.68342 7.75470 8.13625 8.20791 8.70848 9.07182 9.57732 11.06845 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.014970 C = 0.012603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.987307 B = 1869.932608 C = 2221.181802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.553 5.553 3 C 0.060 3.940 4 C -0.105 4.105 5 C 0.188 3.812 6 H -0.001 1.001 7 C -0.496 4.496 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.865 3.135 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.263 1.263 15 N -0.541 5.541 16 C 0.041 3.959 17 C 0.057 3.943 18 C 0.035 3.965 19 H 0.018 0.982 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.016 0.984 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.003 0.997 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 -6.826 -1.238 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.070 4.070 4 C -0.144 4.144 5 C 0.082 3.918 6 H 0.016 0.984 7 C -0.535 4.535 8 H 0.099 0.901 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.693 3.307 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.188 1.188 15 N -0.266 5.266 16 C -0.108 4.108 17 C -0.072 4.072 18 C -0.094 4.094 19 H 0.036 0.964 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.034 0.966 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.962 -6.897 -1.861 12.258 hybrid contribution -1.818 1.007 1.959 2.856 sum -11.780 -5.890 0.098 13.171 Atomic orbital electron populations 1.22331 0.88053 1.01750 0.99612 1.59171 1.06462 1.14484 1.47614 1.21356 0.98323 0.88054 0.99217 1.21862 0.90340 1.02241 0.99963 1.19487 0.96165 0.83507 0.92666 0.98368 1.20990 0.95093 1.05060 1.32309 0.90126 1.24977 0.95374 0.96452 0.96200 1.69889 1.26582 1.15121 1.42107 0.87076 0.84811 0.77878 0.80950 1.20555 1.21468 1.18822 1.62106 1.36805 1.05728 1.21913 1.22168 1.00217 0.99214 0.89166 1.22001 0.87779 0.95787 1.01621 1.22455 0.98447 0.96160 0.92303 0.96362 0.91869 0.91836 0.92026 0.96592 0.91351 0.90558 0.92698 0.93334 0.90372 0.97872 0.92270 0.90192 0.91493 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.46 60.06 0.57 0.98 16 2 N -0.55 -9.37 4.23 -248.02 -1.05 -10.42 16 3 C 0.06 1.13 4.95 -6.55 -0.03 1.10 16 4 C -0.11 -2.29 5.17 -27.07 -0.14 -2.43 16 5 C 0.19 4.47 0.94 -69.38 -0.07 4.40 16 6 H 0.00 -0.03 3.38 -51.93 -0.18 -0.21 16 7 C -0.50 -13.88 7.87 -34.44 -0.27 -14.15 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 11 Si 0.86 21.56 27.00 -169.99 -4.59 16.97 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.26 -6.30 5.39 56.52 0.30 -5.99 16 15 N -0.54 -11.63 4.67 -237.40 -1.11 -12.74 16 16 C 0.04 0.82 9.23 60.06 0.55 1.37 16 17 C 0.06 1.01 5.26 -4.47 -0.02 0.99 16 18 C 0.03 0.59 5.32 -4.50 -0.02 0.56 16 19 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 20 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.05 7.80 -51.93 -0.40 0.65 16 23 H 0.02 0.34 6.21 -51.93 -0.32 0.01 16 24 H 0.07 1.46 7.19 -51.93 -0.37 1.09 16 25 H 0.08 1.74 7.73 -51.93 -0.40 1.34 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 28 H 0.08 1.73 7.41 -51.93 -0.38 1.35 16 29 H 0.00 0.06 7.74 -51.93 -0.40 -0.35 16 30 H 0.06 0.92 7.71 -51.93 -0.40 0.52 16 31 H 0.08 1.46 7.19 -51.93 -0.37 1.08 16 32 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 33 H 0.04 0.72 6.31 -51.93 -0.33 0.39 16 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -29.84 248.00 -7.06 -36.89 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.29 Total: -2.66 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.47 Total: -5.22 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -1.38 Total: -49.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.59 Total: 16.97 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.84 -7.06 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.978 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds