Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47026 * 269.99869 * 3 2 1 5 5 H 1.48500 * 109.47159 * 29.99919 * 3 2 1 6 6 H 1.48501 * 109.47193 * 149.99676 * 3 2 1 7 7 C 1.37875 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99850 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00077 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.51396 * 59.84083 * 9 7 2 11 11 C 1.57174 * 109.10836 * 298.63862 * 9 7 2 12 12 S 1.84629 * 104.50875 * 230.30797 * 11 9 7 13 13 C 1.82499 * 94.69791 * 340.08431 * 12 11 9 14 14 H 1.09001 * 114.43069 * 279.74825 * 13 12 11 15 15 C 1.52450 * 116.77985 * 143.47442 * 13 12 11 16 16 N 1.49384 * 105.00737 * 222.61952 * 15 13 12 17 17 C 1.50200 * 108.05314 * 8.62495 * 16 15 13 18 18 C 1.48338 * 109.54916 * 180.02562 * 9 7 2 19 19 H 1.09002 * 106.69474 * 50.47673 * 18 9 7 20 20 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.96916 * 111.75992 * 11 9 7 22 22 H 1.09008 * 110.84808 * 349.29341 * 11 9 7 23 23 H 1.08999 * 110.33313 * 341.50743 * 15 13 12 24 24 H 1.08999 * 110.33002 * 103.63548 * 15 13 12 25 25 H 1.00905 * 111.00118 * 130.55142 * 16 15 13 26 26 H 1.09002 * 111.00527 * 266.08160 * 17 16 15 27 27 H 1.09002 * 111.00795 * 142.22614 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8760 -0.6772 0.8878 11 6 4.0255 -0.4830 -1.3042 12 16 5.2554 -1.6602 -2.0187 13 6 5.5226 -2.5640 -0.4559 14 1 6.2023 -2.0712 0.2393 15 6 5.7415 -4.0690 -0.5615 16 7 4.9315 -4.6565 0.5477 17 6 4.0955 -3.5606 1.1445 18 6 4.0079 -2.5918 0.0001 19 1 3.4863 -3.1094 -0.8050 20 1 -0.4850 0.8400 -0.0004 21 1 4.5064 0.4612 -1.0486 22 1 3.2064 -0.3169 -2.0040 23 1 5.3876 -4.4365 -1.5247 24 1 6.7967 -4.3084 -0.4300 25 1 4.3521 -5.4112 0.2119 26 1 4.5963 -3.1095 2.0012 27 1 3.1076 -3.9292 1.4209 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259808224.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -0.873195 kcal Electronic energy + Delta-G solvation = -11200.478270 eV Core-core repulsion = 9276.866213 eV Total energy + Delta-G solvation = -1923.612057 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 199.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.35467 -36.12339 -33.74547 -30.25604 -29.24913 -27.30649 -23.86902 -22.32429 -20.87383 -18.99910 -17.97179 -17.06392 -16.20538 -15.98303 -15.61902 -14.87111 -14.52767 -14.05062 -13.54074 -13.41894 -13.09651 -12.91509 -12.63753 -12.33748 -12.03838 -11.67776 -11.48089 -11.13163 -10.93026 -10.73578 -9.55205 -8.72495 -8.35694 -6.40771 0.80180 1.28167 1.30790 1.35237 1.47875 2.28002 2.94440 3.16082 3.27535 3.74698 3.90460 4.12238 4.19968 4.36044 4.50917 4.58458 4.77342 4.84759 4.94946 5.06427 5.09651 5.41547 5.53262 5.56541 6.20375 6.35470 6.63543 7.24098 8.80362 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.044790 B = 0.014104 C = 0.011788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.992224 B = 1984.780633 C = 2374.795760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.511 4.511 8 H 0.038 0.962 9 C 0.028 3.972 10 H 0.045 0.955 11 C -0.064 4.064 12 S -0.313 6.313 13 C -0.073 4.073 14 H 0.120 0.880 15 C 0.075 3.925 16 N -0.676 5.676 17 C 0.075 3.925 18 C -0.103 4.103 19 H 0.049 0.951 20 H 0.268 0.732 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.347 0.653 26 H 0.088 0.912 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.196 -4.003 0.301 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.178 4.178 3 Si 0.754 3.246 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.008 3.992 10 H 0.063 0.937 11 C -0.213 4.213 12 S -0.086 6.086 13 C -0.202 4.202 14 H 0.138 0.862 15 C -0.055 4.055 16 N -0.305 5.305 17 C -0.055 4.055 18 C -0.125 4.125 19 H 0.068 0.932 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.119 0.881 25 H 0.163 0.837 26 H 0.106 0.894 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.058 -4.032 -0.381 12.720 hybrid contribution -1.550 1.261 0.119 2.001 sum 10.508 -2.772 -0.262 10.871 Atomic orbital electron populations 1.70023 1.08175 1.28240 1.51711 1.25835 0.95350 1.02760 0.93846 0.86079 0.79906 0.79226 0.79426 1.19027 1.21575 1.16338 1.21090 0.89953 0.93179 1.50726 0.94370 1.18809 0.95073 0.92846 0.92491 0.93736 1.25482 0.96979 0.98564 1.00240 1.87207 1.56676 1.44781 1.19971 1.25377 1.00822 0.99425 0.94560 0.86227 1.22373 1.00204 0.89048 0.93846 1.63214 1.26654 1.10039 1.30585 1.21946 0.97156 0.90552 0.95830 1.22285 0.92224 0.97526 1.00431 0.93214 0.92318 0.90116 0.90111 0.92154 0.88065 0.83720 0.89382 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.96 21.45 0.30 -56.57 15 2 C 0.02 1.15 5.37 84.65 0.45 1.60 15 3 Si 0.93 41.97 24.54 68.60 1.68 43.65 15 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.24 -9.88 6.37 99.48 0.63 -9.25 15 7 C -0.51 -27.58 8.82 25.60 0.23 -27.35 15 8 H 0.04 2.30 7.98 -2.91 -0.02 2.27 15 9 C 0.03 1.24 2.09 -11.54 -0.02 1.22 15 10 H 0.04 1.93 7.19 -2.39 -0.02 1.91 15 11 C -0.06 -2.67 5.11 73.45 0.38 -2.29 15 12 S -0.31 -11.39 22.57 -56.49 -1.27 -12.66 15 13 C -0.07 -2.29 4.14 32.27 0.13 -2.15 15 14 H 0.12 3.51 8.14 -2.39 -0.02 3.49 15 15 C 0.08 1.98 7.12 85.64 0.61 2.59 15 16 N -0.68 -17.98 7.54 -505.36 -3.81 -21.79 15 17 C 0.07 2.35 7.50 84.75 0.64 2.99 15 18 C -0.10 -3.84 1.62 -11.31 -0.02 -3.86 15 19 H 0.05 2.06 7.34 -2.39 -0.02 2.04 15 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 21 H 0.08 3.12 6.68 -2.39 -0.02 3.10 15 22 H 0.08 3.67 7.17 -2.38 -0.02 3.65 15 23 H 0.06 1.61 8.03 -2.39 -0.02 1.59 15 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.35 8.29 8.94 -89.69 -0.80 7.48 15 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 Total: -1.00 -59.52 225.17 -0.42 -59.94 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.29 Total: 14.69 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 2.39 Total: -27.27 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.51 Total: -78.36 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.68 Total: 43.65 kcal Atomic # 16 Polarization: -11.39 SS G_CDS: -1.27 Total: -12.66 kcal Total: -59.52 -0.42 -59.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808224.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.071 kcal (2) G-P(sol) polarization free energy of solvation -59.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds