Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46854 * 110.99953 * 2 1 4 4 C 1.53032 * 109.52226 * 185.83922 * 3 2 1 5 5 C 1.53114 * 109.28292 * 300.82215 * 4 3 2 6 6 C 1.53118 * 109.16181 * 57.65350 * 5 4 3 7 7 C 1.50700 * 109.50036 * 62.28560 * 6 5 4 8 8 H 1.08000 * 120.00549 * 243.58455 * 7 6 5 9 9 C 1.37885 * 119.99849 * 63.58544 * 7 6 5 10 10 N 1.31515 * 120.00139 * 354.13036 * 9 7 6 11 11 Si 1.86804 * 120.00109 * 174.39754 * 9 7 6 12 12 H 1.48500 * 109.47228 * 179.72615 * 11 9 7 13 13 H 1.48493 * 109.47211 * 299.72815 * 11 9 7 14 14 H 1.48499 * 109.46464 * 59.72736 * 11 9 7 15 15 C 1.52992 * 109.53905 * 182.38472 * 6 5 4 16 16 N 1.46899 * 109.47382 * 183.38313 * 15 6 5 17 17 C 1.46846 * 111.00394 * 124.21133 * 2 1 3 18 18 H 1.09003 * 109.47362 * 295.78425 * 1 2 3 19 19 H 1.08997 * 109.47775 * 55.78841 * 1 2 3 20 20 H 1.09010 * 109.46790 * 175.79114 * 1 2 3 21 21 H 1.08997 * 109.46056 * 305.85678 * 3 2 1 22 22 H 1.09002 * 109.45626 * 65.82449 * 3 2 1 23 23 H 1.09002 * 109.50289 * 60.76563 * 4 3 2 24 24 H 1.09002 * 109.49893 * 180.83756 * 4 3 2 25 25 H 1.09004 * 109.51915 * 297.74929 * 5 4 3 26 26 H 1.09004 * 109.52452 * 177.56122 * 5 4 3 27 27 H 0.96990 * 120.00129 * 179.97438 * 10 9 7 28 28 H 1.08998 * 109.47369 * 303.38711 * 15 6 5 29 29 H 1.09005 * 109.47210 * 63.38425 * 15 6 5 30 30 H 1.00895 * 111.00110 * 62.06167 * 16 15 6 31 31 H 1.00904 * 110.99895 * 186.01053 * 16 15 6 32 32 H 1.09005 * 109.46336 * 54.14736 * 17 2 1 33 33 H 1.09002 * 109.46408 * 294.17908 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 -0.1467 5 6 4.1188 0.5370 1.0143 6 6 3.5182 -0.8714 1.0208 7 6 3.8820 -1.5794 -0.2588 8 1 3.1079 -1.8748 -0.9515 9 6 5.2034 -1.8500 -0.5453 10 7 6.1538 -1.3901 0.2389 11 14 5.6440 -2.8635 -2.0513 12 1 7.1197 -3.0052 -2.1383 13 1 5.0232 -4.2080 -1.9422 14 1 5.1394 -2.1828 -3.2708 15 6 4.0680 -1.6567 2.2131 16 7 3.5542 -3.0323 2.1725 17 6 1.9953 -0.7708 1.1337 18 1 -0.3634 0.4470 0.9254 19 1 -0.3634 0.5778 -0.8498 20 1 -0.3633 -1.0250 -0.0754 21 1 1.5633 1.9257 -0.8329 22 1 1.7324 1.8608 0.9376 23 1 3.7813 0.8569 -1.0907 24 1 3.9097 2.3514 -0.1318 25 1 3.8887 1.0355 1.9559 26 1 5.1998 0.4715 0.8904 27 1 7.0832 -1.5808 0.0376 28 1 5.1568 -1.6739 2.1659 29 1 3.7522 -1.1781 3.1402 30 1 3.8616 -3.5086 1.3379 31 1 3.8229 -3.5432 3.0001 32 1 1.5635 -1.7716 1.1242 33 1 1.7325 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259837232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -0.896981 kcal Electronic energy + Delta-G solvation = -13881.437368 eV Core-core repulsion = 11748.623165 eV Total energy + Delta-G solvation = -2132.814203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.32293 -34.69365 -31.96789 -31.35396 -29.22610 -25.84995 -24.90566 -23.54509 -21.69303 -19.94669 -18.48927 -15.54246 -15.07941 -14.64127 -14.29825 -13.91562 -13.51067 -13.27608 -12.94705 -12.22043 -11.86515 -11.46044 -11.31656 -11.18869 -10.98262 -10.73220 -10.69939 -10.48506 -9.92073 -9.53276 -9.16203 -8.95143 -8.57318 -8.23262 -7.36053 -7.32830 -5.84088 -3.86952 3.37720 3.42400 3.47189 4.52255 4.85562 5.39351 5.75812 5.87617 5.89017 6.02466 6.10760 6.29966 6.32966 6.42129 6.53391 6.62596 6.79618 6.84960 6.88036 7.15821 7.28074 7.52857 7.53448 7.62044 7.95764 8.05111 8.10578 8.25411 8.48753 8.68221 8.73683 9.15522 9.72283 11.15841 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.015467 C = 0.014123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.049333 B = 1809.884828 C = 1982.118314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.528 5.528 3 C 0.065 3.935 4 C -0.101 4.101 5 C -0.109 4.109 6 C 0.078 3.922 7 C -0.459 4.459 8 H 0.062 0.938 9 C 0.052 3.948 10 N -0.898 5.898 11 Si 0.884 3.116 12 H -0.293 1.293 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.072 3.928 16 N -0.847 5.847 17 C 0.084 3.916 18 H 0.010 0.990 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.012 0.988 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.009 0.991 26 H 0.093 0.907 27 H 0.255 0.745 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.346 0.654 31 H 0.309 0.691 32 H 0.072 0.928 33 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 2.101 1.313 5.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.064 4.064 4 C -0.139 4.139 5 C -0.147 4.147 6 C 0.077 3.923 7 C -0.498 4.498 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.713 3.287 12 H -0.219 1.219 13 H -0.206 1.206 14 H -0.205 1.205 15 C -0.059 4.059 16 N -0.375 5.375 17 C -0.043 4.043 18 H 0.028 0.972 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.096 0.904 24 H 0.055 0.945 25 H 0.028 0.972 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.160 0.840 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -5.300 2.222 0.863 5.811 hybrid contribution 0.997 -0.354 -0.044 1.059 sum -4.303 1.869 0.819 4.762 Atomic orbital electron populations 1.22309 0.89719 1.01244 0.98807 1.61831 1.04952 1.13013 1.45367 1.22015 0.97302 0.89180 0.97865 1.21409 0.92608 0.97752 1.02099 1.21620 1.03743 0.95948 0.93392 1.18157 0.88215 0.91649 0.94240 1.20991 0.91506 1.33863 1.03405 0.91980 1.24947 0.96701 0.96563 0.96388 1.69809 0.99582 1.46064 1.38480 0.86774 0.76649 0.81058 0.84182 1.21933 1.20564 1.20522 1.21761 0.99814 0.88401 0.95968 1.58827 1.67761 1.04658 1.06221 1.22115 0.98608 0.96239 0.87373 0.97187 0.92626 0.92019 0.92780 0.96936 0.90430 0.94488 0.97181 0.88821 0.93443 0.92052 0.96193 0.84015 0.88209 0.90997 0.98476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.59 60.06 0.58 1.05 16 2 N -0.53 -10.95 4.44 -242.96 -1.08 -12.03 16 3 C 0.06 1.26 5.46 -3.83 -0.02 1.24 16 4 C -0.10 -2.16 5.84 -26.66 -0.16 -2.31 16 5 C -0.11 -2.54 4.63 -26.61 -0.12 -2.66 16 6 C 0.08 1.86 0.33 -155.58 -0.05 1.81 16 7 C -0.46 -11.82 5.35 -34.44 -0.18 -12.00 16 8 H 0.06 1.70 7.65 -52.49 -0.40 1.29 16 9 C 0.05 1.36 5.08 -17.82 -0.09 1.27 16 10 N -0.90 -23.96 9.42 55.43 0.52 -23.44 16 11 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.07 1.66 5.43 -3.83 -0.02 1.64 16 16 N -0.85 -17.89 8.92 -10.37 -0.09 -17.98 16 17 C 0.08 1.86 4.00 -3.83 -0.02 1.84 16 18 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 19 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 20 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 21 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.08 1.84 7.35 -51.93 -0.38 1.46 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 2.42 6.10 -51.93 -0.32 2.11 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 28 H 0.06 1.56 6.14 -51.93 -0.32 1.24 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.35 7.79 7.91 -39.29 -0.31 7.48 16 31 H 0.31 5.71 9.08 -39.29 -0.36 5.35 16 32 H 0.07 1.65 7.72 -51.93 -0.40 1.25 16 33 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 16 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -26.33 252.79 -7.37 -33.70 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.42 Total: 8.13 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.09 Total: -8.12 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.65 Total: -53.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.33 -7.37 -33.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.804 kcal (2) G-P(sol) polarization free energy of solvation -26.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds