Wall clock time and date at job start Mon Mar 30 2020 02:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46784 * 2 1 4 4 C 1.50699 * 109.46906 * 240.00092 * 2 1 3 5 5 H 1.08001 * 120.00189 * 239.99771 * 4 2 1 6 6 C 1.37882 * 120.00141 * 60.00414 * 4 2 1 7 7 N 1.31510 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00205 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47171 * 59.99658 * 8 6 4 10 10 H 1.48494 * 109.46945 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47095 * 299.99634 * 8 6 4 12 12 C 1.50703 * 109.47315 * 120.00310 * 2 1 3 13 13 C 1.34819 * 126.28291 * 59.68575 * 12 2 1 14 14 N 1.36487 * 108.22511 * 180.26376 * 13 12 2 15 15 H 0.97003 * 125.64188 * 180.02562 * 14 13 12 16 16 C 1.36345 * 108.71777 * 0.02562 * 14 13 12 17 17 Cl 1.73598 * 125.89770 * 180.02562 * 16 14 13 18 18 C 1.34970 * 108.20247 * 359.97438 * 16 14 13 19 19 H 1.09004 * 109.47581 * 60.00048 * 1 2 3 20 20 H 1.09009 * 109.47301 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47482 * 299.99416 * 1 2 3 22 22 H 0.96995 * 120.00556 * 180.02562 * 7 6 4 23 23 H 1.07998 * 125.88735 * 0.23454 * 13 12 2 24 24 H 1.07998 * 126.28918 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.8279 -2.5197 -4.0083 10 1 1.8268 -0.4197 -5.2204 11 1 3.8074 -1.1188 -4.0079 12 6 2.0324 -0.7105 1.2304 13 6 1.7812 -1.9905 1.5710 14 7 2.4102 -2.2486 2.7545 15 1 2.3967 -3.0946 3.2290 16 6 3.0607 -1.1208 3.1593 17 17 4.0038 -0.9540 4.6072 18 6 2.8456 -0.1569 2.2394 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 0.7082 1.1610 -3.4843 23 1 1.1846 -2.6908 1.0053 24 1 3.2269 0.8531 2.2708 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065745.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:10 Heat of formation + Delta-G solvation = 27.800764 kcal Electronic energy + Delta-G solvation = -10443.488077 eV Core-core repulsion = 8383.242615 eV Total energy + Delta-G solvation = -2060.245462 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.44700 -36.31075 -34.29130 -31.31599 -29.31199 -27.06023 -25.00618 -21.82404 -20.13243 -18.62925 -17.47342 -15.96721 -14.49809 -13.98482 -13.63901 -13.28688 -12.63165 -12.46348 -11.62961 -11.43392 -11.28400 -10.95511 -10.82848 -10.75145 -10.26137 -9.95511 -9.44803 -8.92087 -8.28201 -7.99796 -7.27906 -5.91559 -3.97160 2.17470 2.66495 3.35785 3.40517 3.42770 3.75500 3.99129 4.50945 5.38835 5.87879 6.05740 6.24875 6.73121 6.86015 6.97698 7.18856 7.35696 7.50650 7.65726 7.84143 7.95828 8.17452 8.22264 8.54513 9.05766 9.66679 11.14107 Molecular weight = 199.05amu Principal moments of inertia in cm(-1) A = 0.060615 B = 0.008575 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.824027 B = 3264.573110 C = 3400.940186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.100 3.900 3 H 0.033 0.967 4 C -0.502 4.502 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.102 4.102 13 C -0.008 4.008 14 N -0.563 5.563 15 H 0.408 0.592 16 C 0.037 3.963 17 Cl -0.051 7.051 18 C -0.166 4.166 19 H 0.082 0.918 20 H 0.024 0.976 21 H 0.007 0.993 22 H 0.260 0.740 23 H 0.167 0.833 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 -4.614 9.660 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.051 0.949 4 C -0.541 4.541 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.108 4.108 13 C -0.137 4.137 14 N -0.163 5.163 15 H 0.243 0.757 16 C -0.100 4.100 17 Cl -0.023 7.023 18 C -0.193 4.193 19 H 0.101 0.899 20 H 0.043 0.957 21 H 0.026 0.974 22 H 0.070 0.930 23 H 0.185 0.815 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.164 -4.607 9.711 10.964 hybrid contribution 0.489 -0.919 -0.467 1.141 sum 2.653 -5.526 9.244 11.092 Atomic orbital electron populations 1.21762 0.98094 0.98866 0.99998 1.17292 0.92133 0.95027 0.87434 0.94897 1.21151 1.30664 1.12174 0.90085 0.92720 1.24963 0.95249 0.95068 0.98834 1.69874 1.36948 1.23005 1.23308 0.86686 0.79205 0.79696 0.82543 1.20433 1.21384 1.20386 1.20260 0.99386 0.93532 0.97611 1.21707 1.04708 0.99085 0.88152 1.41849 1.42529 1.11187 1.20739 0.75672 1.20620 1.05755 0.90475 0.93167 1.98319 1.70812 1.97135 1.35989 1.20744 1.05114 0.98635 0.94832 0.89914 0.95700 0.97363 0.93039 0.81532 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.85 37.16 0.33 -2.81 14 2 C 0.10 2.54 2.67 -92.92 -0.25 2.29 14 3 H 0.03 0.91 8.13 -51.93 -0.42 0.48 14 4 C -0.50 -13.75 8.41 -34.44 -0.29 -14.03 14 5 H 0.05 1.49 7.72 -52.49 -0.41 1.08 14 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 14 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 14 8 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 14 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 14 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 14 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 12 C -0.10 -2.23 4.82 -104.82 -0.50 -2.74 14 13 C -0.01 -0.16 11.34 -16.69 -0.19 -0.34 14 14 N -0.56 -8.99 6.08 -10.00 -0.06 -9.05 14 15 H 0.41 4.98 8.96 -40.82 -0.37 4.61 14 16 C 0.04 0.63 7.78 -16.71 -0.13 0.50 14 17 Cl -0.05 -0.72 29.31 -51.86 -1.52 -2.24 14 18 C -0.17 -3.30 10.78 -39.73 -0.43 -3.72 14 19 H 0.08 2.19 6.07 -51.93 -0.32 1.88 14 20 H 0.02 0.56 8.01 -51.92 -0.42 0.14 14 21 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 14 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 14 23 H 0.17 2.92 8.06 -52.49 -0.42 2.50 14 24 H 0.14 2.58 8.06 -52.49 -0.42 2.15 14 LS Contribution 228.96 15.07 3.45 3.45 Total: -1.00 -28.81 228.96 -6.41 -35.21 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.33 Total: 0.52 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.56 Total: -19.31 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.57 Total: -33.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.52 Total: -2.24 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.81 -6.41 -35.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065745.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.014 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds