Wall clock time and date at job start Mon Mar 30 2020 02:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99829 * 2 1 4 4 C 1.46904 * 111.00155 * 123.95483 * 2 1 3 5 5 C 1.53003 * 109.46974 * 170.00358 * 4 2 1 6 6 N 1.46894 * 109.46925 * 179.97438 * 5 4 2 7 7 C 1.46896 * 111.00433 * 175.70989 * 6 5 4 8 8 C 1.50702 * 115.54855 * 294.71505 * 7 6 5 9 9 H 1.08007 * 120.00263 * 99.53039 * 8 7 6 10 10 C 1.37879 * 119.99831 * 279.52422 * 8 7 6 11 11 N 1.31511 * 120.00032 * 355.09282 * 10 8 7 12 12 Si 1.86803 * 119.99872 * 175.09653 * 10 8 7 13 13 H 1.48497 * 109.46950 * 180.02562 * 12 10 8 14 14 H 1.48510 * 109.46977 * 299.99756 * 12 10 8 15 15 H 1.48491 * 109.47322 * 60.00060 * 12 10 8 16 16 C 1.53005 * 117.51749 * 80.40612 * 7 6 5 17 17 C 1.52998 * 117.50313 * 149.03803 * 7 6 5 18 18 H 1.09005 * 109.47032 * 296.04157 * 1 2 3 19 19 H 1.08998 * 109.46912 * 56.04366 * 1 2 3 20 20 H 1.08993 * 109.46877 * 176.04617 * 1 2 3 21 21 H 1.09002 * 109.47103 * 183.95634 * 3 2 1 22 22 H 1.08996 * 109.47496 * 303.95290 * 3 2 1 23 23 H 1.09006 * 109.47271 * 63.95462 * 3 2 1 24 24 H 1.08997 * 109.46802 * 49.99997 * 4 2 1 25 25 H 1.09005 * 109.47010 * 290.00199 * 4 2 1 26 26 H 1.09000 * 109.47334 * 59.99765 * 5 4 2 27 27 H 1.08999 * 109.46535 * 299.99445 * 5 4 2 28 28 H 1.00897 * 111.00419 * 299.66974 * 6 5 4 29 29 H 0.96999 * 119.99998 * 179.97438 * 11 10 8 30 30 H 1.08997 * 117.50297 * 214.97371 * 16 7 6 31 31 H 1.09003 * 117.49751 * 0.02562 * 16 7 6 32 32 H 1.09000 * 117.49891 * 359.97438 * 17 7 6 33 33 H 1.08998 * 117.49622 * 145.00155 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0311 -1.7207 2.1081 7 6 5.4605 -2.0099 1.9319 8 6 5.8025 -2.9177 0.7785 9 1 6.1554 -2.4987 -0.1523 10 6 5.6649 -4.2831 0.9117 11 7 5.3284 -4.8000 2.0732 12 14 5.9567 -5.3989 -0.5578 13 1 5.7459 -6.8127 -0.1554 14 1 5.0062 -5.0467 -1.6432 15 1 7.3491 -5.2243 -1.0432 16 6 6.4542 -0.8981 2.2745 17 6 6.3209 -2.1148 3.1926 18 1 -0.3633 0.4512 0.9234 19 1 -0.3633 0.5740 -0.8524 20 1 -0.3633 -1.0252 -0.0709 21 1 3.0828 1.3433 -0.0709 22 1 1.5898 1.9164 -0.8524 23 1 1.7043 1.8724 0.9233 24 1 1.5090 -1.7406 1.1756 25 1 1.7975 -0.2248 2.0628 26 1 3.9910 0.0194 0.9323 27 1 3.7024 -1.4965 0.0451 28 1 3.8647 -1.2367 2.9777 29 1 5.2313 -5.7605 2.1668 30 1 7.3553 -0.8233 1.6659 31 1 6.0474 0.0481 2.6312 32 1 5.8264 -1.9687 4.1530 33 1 7.1342 -2.8403 3.1879 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260740996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:12 Heat of formation + Delta-G solvation = 32.939614 kcal Electronic energy + Delta-G solvation = -12930.687483 eV Core-core repulsion = 10799.340545 eV Total energy + Delta-G solvation = -2131.346938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.66431 -36.55027 -32.39041 -31.74361 -27.58420 -27.30928 -25.43374 -22.97747 -21.14810 -20.24441 -19.41020 -16.20348 -15.32708 -15.05756 -14.70739 -14.49460 -13.96826 -13.82586 -12.97171 -12.50779 -12.24623 -11.96493 -11.53199 -11.39235 -11.08743 -10.90666 -10.84232 -10.59863 -10.40744 -10.15262 -9.68659 -9.09680 -8.64087 -8.18321 -8.11742 -6.88094 -5.92768 -4.02806 3.37300 3.41620 3.44989 4.15745 4.47264 5.16027 5.33334 5.37967 5.40962 5.51681 5.56881 5.68779 5.82231 5.94386 5.98283 6.03137 6.18411 6.34252 6.39512 6.66741 6.70138 6.75452 6.99350 7.16370 7.27041 7.35980 7.50267 7.86345 8.10082 8.64421 8.77383 9.03814 9.65116 11.15441 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.010271 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.902425 B = 2725.336227 C = 3229.357226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.059 3.941 5 C 0.079 3.921 6 N -0.644 5.644 7 C 0.227 3.773 8 C -0.495 4.495 9 H 0.057 0.943 10 C 0.085 3.915 11 N -0.859 5.859 12 Si 0.888 3.112 13 H -0.287 1.287 14 H -0.275 1.275 15 H -0.278 1.278 16 C -0.257 4.257 17 C -0.154 4.154 18 H 0.020 0.980 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.081 0.919 25 H 0.022 0.978 26 H 0.010 0.990 27 H 0.086 0.914 28 H 0.306 0.694 29 H 0.258 0.742 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 8.204 -1.522 10.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.051 4.051 6 N -0.271 5.271 7 C 0.137 3.863 8 C -0.533 4.533 9 H 0.075 0.925 10 C -0.121 4.121 11 N -0.494 5.494 12 Si 0.715 3.285 13 H -0.213 1.213 14 H -0.200 1.200 15 H -0.204 1.204 16 C -0.297 4.297 17 C -0.193 4.193 18 H 0.038 0.962 19 H 0.082 0.918 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.172 7.174 -2.099 9.694 hybrid contribution 0.224 0.696 0.332 0.802 sum -5.948 7.870 -1.768 10.022 Atomic orbital electron populations 1.22348 0.87856 1.02142 0.99781 1.61896 1.07283 1.13559 1.44285 1.22425 1.01517 0.88979 0.99627 1.22178 0.97389 0.97783 0.89565 1.21626 0.91061 0.95058 0.97330 1.60488 1.17637 1.47083 1.01885 1.19016 0.80225 0.92161 0.94878 1.20108 1.45731 0.89994 0.97509 0.92453 1.24937 0.93966 0.97889 0.95343 1.70039 1.45091 1.11593 1.22698 0.86752 0.78640 0.79654 0.83427 1.21315 1.20039 1.20362 1.23595 1.05704 0.92875 1.07515 1.22620 1.04297 0.98327 0.94009 0.96162 0.91816 0.91349 0.90857 0.91934 0.96202 0.90083 0.95927 0.97184 0.89557 0.87838 0.93181 0.90460 0.92353 0.91971 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.57 60.07 0.57 0.92 16 2 N -0.55 -8.48 5.02 -251.25 -1.26 -9.74 16 3 C 0.02 0.31 9.32 60.06 0.56 0.87 16 4 C 0.06 1.02 5.26 -3.82 -0.02 1.00 16 5 C 0.08 1.62 5.50 -3.83 -0.02 1.60 16 6 N -0.64 -14.88 6.64 -101.14 -0.67 -15.55 16 7 C 0.23 5.73 1.62 -132.75 -0.21 5.51 16 8 C -0.49 -13.76 8.16 -34.44 -0.28 -14.04 16 9 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 10 C 0.08 2.37 5.44 -17.82 -0.10 2.27 16 11 N -0.86 -24.86 12.87 55.43 0.71 -24.15 16 12 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 C -0.26 -5.79 10.12 -26.73 -0.27 -6.06 16 17 C -0.15 -3.73 9.47 -26.73 -0.25 -3.98 16 18 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 19 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 20 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 21 H 0.07 1.05 6.47 -51.93 -0.34 0.71 16 22 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 25 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.01 0.20 6.55 -51.93 -0.34 -0.14 16 27 H 0.09 2.02 7.46 -51.93 -0.39 1.63 16 28 H 0.31 6.50 8.65 -39.29 -0.34 6.16 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 2.21 8.14 -51.93 -0.42 1.78 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -29.10 274.51 -7.72 -36.81 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.59 Total: 3.97 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.02 Total: -11.91 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.22 Total: -49.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.10 -7.72 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260740996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.754 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds