Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.50702 * 109.46648 * 119.99689 * 2 1 3 5 5 H 1.08004 * 119.99376 * 116.79778 * 4 2 1 6 6 C 1.37867 * 120.00300 * 296.79765 * 4 2 1 7 7 N 1.31517 * 120.00128 * 352.34336 * 6 4 2 8 8 Si 1.86806 * 120.00326 * 172.34646 * 6 4 2 9 9 H 1.48501 * 109.46980 * 265.10305 * 8 6 4 10 10 H 1.48504 * 109.46706 * 25.10475 * 8 6 4 11 11 H 1.48496 * 109.47364 * 145.09955 * 8 6 4 12 12 C 1.50699 * 109.47003 * 239.99714 * 2 1 3 13 13 N 1.29119 * 124.87796 * 119.72364 * 12 2 1 14 14 C 1.31940 * 117.09858 * 179.83565 * 13 12 2 15 15 O 1.36125 * 122.79963 * 180.17327 * 14 13 12 16 16 C 1.33990 * 114.39760 * 0.44644 * 14 13 12 17 17 S 1.70955 * 124.87971 * 300.02346 * 12 2 1 18 18 H 1.09004 * 109.47239 * 180.17531 * 1 2 3 19 19 H 1.09003 * 109.47461 * 300.17919 * 1 2 3 20 20 H 1.09003 * 109.46981 * 60.17429 * 1 2 3 21 21 H 0.96998 * 120.00180 * 180.02562 * 7 6 4 22 22 H 0.96701 * 114.00507 * 270.26402 * 15 14 13 23 23 H 1.07996 * 126.03416 * 179.76494 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6098 -1.6177 1.1323 6 6 1.7545 -0.2021 2.4816 7 7 1.1840 0.9769 2.6006 8 14 2.1885 -1.1879 4.0079 9 1 1.0030 -1.9665 4.4479 10 1 3.3036 -2.1176 3.6960 11 1 2.6039 -0.2631 5.0930 12 6 2.0323 -0.7105 -1.2304 13 7 2.7736 -0.1744 -2.1417 14 6 3.1286 -0.9407 -3.1553 15 8 3.9102 -0.4963 -4.1774 16 6 2.6508 -2.1912 -3.0977 17 16 1.6966 -2.3399 -1.6240 18 1 -0.3634 -1.0277 0.0031 19 1 -0.3634 0.5166 0.8884 20 1 -0.3633 0.5111 -0.8916 21 1 0.9889 1.3347 3.4808 22 1 3.4144 -0.1129 -4.9138 23 1 2.8206 -2.9704 -3.8259 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260805114.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -4.756667 kcal Electronic energy + Delta-G solvation = -10471.796963 eV Core-core repulsion = 8412.183411 eV Total energy + Delta-G solvation = -2059.613551 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.53051 -36.36164 -34.21329 -31.10670 -28.43782 -25.33070 -24.41888 -21.24920 -19.42127 -18.23059 -16.67038 -16.22840 -15.28405 -14.71714 -13.96673 -13.15341 -12.84769 -12.31674 -12.01294 -11.68812 -11.01121 -10.91284 -10.78001 -10.53159 -10.33809 -10.08899 -9.30226 -8.88046 -8.72702 -8.48503 -8.00749 -6.17639 -4.23320 1.32412 1.97941 2.44182 3.24146 3.25979 3.32591 3.36872 4.21189 4.37945 5.16251 5.38650 5.77393 5.94888 6.47249 6.60801 6.81464 6.91789 7.48548 7.61392 7.76381 7.81836 8.08895 8.42678 8.77102 9.41291 10.90842 Molecular weight = 199.04amu Principal moments of inertia in cm(-1) A = 0.053595 B = 0.010462 C = 0.010139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.314437 B = 2675.828485 C = 2760.844163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.103 3.897 3 H 0.067 0.933 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.284 1.284 12 C 0.141 3.859 13 N -0.520 5.520 14 C 0.253 3.747 15 O -0.470 6.470 16 C -0.330 4.330 17 S 0.135 5.865 18 H 0.035 0.965 19 H 0.084 0.916 20 H 0.019 0.981 21 H 0.265 0.735 22 H 0.388 0.612 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 -4.978 -7.856 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.085 0.915 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 C -0.137 4.137 13 N -0.241 5.241 14 C 0.079 3.921 15 O -0.275 6.275 16 C -0.471 4.471 17 S 0.389 5.611 18 H 0.054 0.946 19 H 0.102 0.898 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.243 0.757 23 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.260 -5.301 -6.918 8.806 hybrid contribution 0.595 0.023 -0.304 0.669 sum -0.665 -5.278 -7.223 8.970 Atomic orbital electron populations 1.21816 0.96504 0.99775 1.00820 1.17802 0.92788 0.96754 0.84574 0.91503 1.21007 1.35470 1.10129 0.89400 0.91984 1.24902 0.94773 0.94670 0.98998 1.69941 1.41992 1.15917 1.24108 0.86483 0.78862 0.79978 0.82249 1.20362 1.19656 1.21026 1.28056 0.93539 0.94003 0.98064 1.65991 1.16303 1.37909 1.03934 1.18009 0.95362 0.88500 0.90212 1.84927 1.33072 1.81422 1.28105 1.26699 1.11673 1.02522 1.06213 1.83917 1.46797 1.15836 1.14535 0.94585 0.89759 0.96219 0.92537 0.75749 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.90 37.16 0.33 -2.62 14 2 C 0.10 2.56 2.62 -92.92 -0.24 2.32 14 3 H 0.07 1.85 8.14 -51.93 -0.42 1.43 14 4 C -0.52 -13.84 8.36 -34.44 -0.29 -14.13 14 5 H 0.06 1.64 7.73 -52.48 -0.41 1.24 14 6 C 0.07 1.86 5.22 -17.82 -0.09 1.77 14 7 N -0.88 -24.26 11.92 55.43 0.66 -23.60 14 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 14 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 14 12 C 0.14 3.19 5.98 -13.42 -0.08 3.11 14 13 N -0.52 -11.80 10.56 -11.95 -0.13 -11.92 14 14 C 0.25 4.93 7.83 -19.00 -0.15 4.78 14 15 O -0.47 -7.81 13.64 -20.14 -0.27 -8.08 14 16 C -0.33 -5.70 11.35 29.24 0.33 -5.37 14 17 S 0.13 2.52 22.67 -107.50 -2.44 0.08 14 18 H 0.04 0.75 7.93 -51.93 -0.41 0.34 14 19 H 0.08 2.06 6.64 -51.93 -0.34 1.71 14 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 14 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 14 22 H 0.39 4.23 9.07 45.56 0.41 4.65 14 23 H 0.17 2.34 8.06 -52.49 -0.42 1.92 14 LS Contribution 223.93 15.07 3.37 3.37 Total: -1.00 -29.50 223.93 -5.17 -34.67 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -1.15 Total: 0.03 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.19 Total: -10.14 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.53 Total: -35.52 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.27 Total: -8.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.44 Total: 0.08 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.50 -5.17 -34.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260805114.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.916 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds