Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36944 * 120.00186 * 85.06581 * 3 2 1 5 5 H 1.07995 * 119.99839 * 209.77320 * 4 3 2 6 6 C 1.38807 * 119.99713 * 29.77315 * 4 3 2 7 7 N 1.31618 * 120.00423 * 40.67273 * 6 4 3 8 8 Si 1.86804 * 120.00012 * 220.67132 * 6 4 3 9 9 H 1.48498 * 109.47071 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47033 * 300.00130 * 8 6 4 11 11 H 1.48499 * 109.46812 * 60.00006 * 8 6 4 12 12 C 1.46503 * 120.00109 * 265.05954 * 3 2 1 13 13 H 1.08993 * 110.27213 * 359.37004 * 12 3 2 14 14 C 1.54595 * 110.30931 * 237.17067 * 12 3 2 15 15 C 1.54936 * 102.92169 * 219.12655 * 14 12 3 16 16 N 1.48535 * 103.22924 * 37.41713 * 15 14 12 17 17 C 1.46893 * 111.00106 * 200.28109 * 16 15 14 18 18 C 1.47901 * 105.81576 * 320.79369 * 16 15 14 19 19 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 21 21 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 22 22 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 23 23 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 24 24 H 0.97003 * 119.99811 * 5.83725 * 7 6 4 25 25 H 1.08999 * 110.72938 * 337.48822 * 14 12 3 26 26 H 1.09005 * 110.71945 * 100.77535 * 14 12 3 27 27 H 1.09001 * 110.67015 * 278.98004 * 15 14 12 28 28 H 1.09005 * 110.66852 * 155.85311 * 15 14 12 29 29 H 1.09006 * 109.47451 * 177.39592 * 17 16 15 30 30 H 1.09001 * 109.47189 * 297.39353 * 17 16 15 31 31 H 1.08999 * 109.47595 * 57.39582 * 17 16 15 32 32 H 1.09003 * 109.91770 * 265.97601 * 18 16 15 33 33 H 1.09004 * 110.07909 * 144.77683 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1502 2.0609 1.1816 5 1 2.0332 3.1342 1.2030 6 6 2.4344 1.3700 2.3515 7 7 3.3022 0.3805 2.3373 8 14 1.5852 1.8447 3.9462 9 1 2.0591 0.9609 5.0414 10 1 1.9057 3.2566 4.2764 11 1 0.1163 1.6943 3.7885 12 6 2.3653 2.0355 -1.2640 13 1 2.2118 1.3510 -2.0982 14 6 3.8318 2.5237 -1.2305 15 6 3.7585 3.8909 -1.9557 16 7 2.4618 4.4506 -1.4958 17 6 1.9841 5.4943 -2.4124 18 6 1.5217 3.3094 -1.4558 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.8056 0.1885 1.5307 25 1 4.1730 2.6499 -0.2030 26 1 4.4802 1.8344 -1.7715 27 1 3.7561 3.7532 -3.0370 28 1 4.5846 4.5331 -1.6505 29 1 1.0113 5.8546 -2.0776 30 1 2.6939 6.3214 -2.4227 31 1 1.8925 5.0816 -3.4170 32 1 0.9687 3.2509 -2.3933 33 1 0.8284 3.4247 -0.6225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261117494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = 26.791411 kcal Electronic energy + Delta-G solvation = -13540.387850 eV Core-core repulsion = 11408.774306 eV Total energy + Delta-G solvation = -2131.613544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.46036 -35.45049 -31.64568 -30.93381 -28.85638 -27.06319 -24.95167 -23.62495 -20.97481 -20.53965 -19.51478 -16.78512 -15.56558 -15.17890 -14.11111 -13.79310 -13.58304 -13.51319 -12.82303 -12.40923 -12.35477 -11.62799 -11.44315 -11.16831 -10.95814 -10.85288 -10.61923 -10.44205 -10.21009 -10.10569 -9.93434 -9.79615 -9.35747 -8.11989 -7.88046 -6.77460 -6.03892 -3.08953 3.58072 3.61981 3.79251 4.54973 4.69371 5.15437 5.32996 5.42982 5.53567 5.63334 5.78805 5.88217 5.94251 6.06292 6.15466 6.23101 6.23871 6.42140 6.52266 6.58395 6.63386 6.72950 6.97033 7.13842 7.18016 7.36929 7.48649 7.57813 8.31778 8.67679 9.21633 9.96444 10.40938 11.17833 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.012724 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.003291 B = 2200.015395 C = 2416.154845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 N -0.583 5.583 4 C -0.354 4.354 5 H 0.062 0.938 6 C -0.012 4.012 7 N -0.888 5.888 8 Si 1.041 2.959 9 H -0.289 1.289 10 H -0.292 1.292 11 H -0.295 1.295 12 C 0.165 3.835 13 H 0.050 0.950 14 C -0.133 4.133 15 C 0.037 3.963 16 N -0.515 5.515 17 C 0.019 3.981 18 C 0.028 3.972 19 H 0.034 0.966 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.071 0.929 24 H 0.268 0.732 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 3.850 -8.128 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 N -0.304 5.304 4 C -0.482 4.482 5 H 0.080 0.920 6 C -0.217 4.217 7 N -0.525 5.525 8 Si 0.871 3.129 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.222 1.222 12 C 0.057 3.943 13 H 0.068 0.932 14 C -0.173 4.173 15 C -0.091 4.091 16 N -0.239 5.239 17 C -0.130 4.130 18 C -0.101 4.101 19 H 0.053 0.947 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.240 3.676 -5.995 7.381 hybrid contribution -0.003 0.239 -2.530 2.541 sum -2.243 3.915 -8.525 9.646 Atomic orbital electron populations 1.22214 0.99869 0.98746 1.00985 1.20880 0.91711 0.86619 0.99940 1.44124 1.73374 1.11387 1.01467 1.19676 1.49360 0.93581 0.85572 0.92030 1.25578 0.96831 0.98541 1.00707 1.70802 1.17569 1.34343 1.29759 0.83883 0.76731 0.75558 0.76762 1.21511 1.21925 1.22214 1.21192 0.91701 0.92105 0.89340 0.93173 1.22955 0.98663 0.93722 1.01983 1.23160 0.92638 0.96992 0.96300 1.64674 1.03160 1.10224 1.45858 1.22474 1.00740 0.96001 0.93803 1.23434 0.95869 0.91304 0.99508 0.94742 0.92624 0.94650 0.95668 0.91110 0.92216 0.88988 0.93012 0.95143 0.91152 0.91889 0.92030 0.96329 0.95892 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.21 37.16 0.38 -2.87 16 2 C 0.13 3.11 5.90 -4.04 -0.02 3.08 16 3 N -0.58 -14.17 2.33 -164.13 -0.38 -14.55 16 4 C -0.35 -9.62 7.40 -15.06 -0.11 -9.73 16 5 H 0.06 1.78 7.44 -52.49 -0.39 1.39 16 6 C -0.01 -0.33 4.52 -17.43 -0.08 -0.41 16 7 N -0.89 -26.04 12.21 55.49 0.68 -25.36 16 8 Si 1.04 25.37 30.06 -169.99 -5.11 20.27 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 C 0.17 3.49 3.52 -66.57 -0.23 3.26 16 13 H 0.05 1.00 7.78 -51.93 -0.40 0.59 16 14 C -0.13 -2.69 6.64 -24.87 -0.17 -2.86 16 15 C 0.04 0.65 6.56 -1.90 -0.01 0.64 16 16 N -0.52 -9.63 5.55 -238.71 -1.33 -10.96 16 17 C 0.02 0.28 9.40 60.06 0.56 0.85 16 18 C 0.03 0.56 6.00 -2.75 -0.02 0.55 16 19 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 21 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.02 0.53 7.83 -51.93 -0.41 0.12 16 23 H 0.07 1.84 5.70 -51.93 -0.30 1.55 16 24 H 0.27 7.95 8.11 -40.82 -0.33 7.62 16 25 H 0.09 2.21 7.06 -51.93 -0.37 1.84 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.02 0.25 8.00 -51.93 -0.42 -0.16 16 32 H 0.02 0.41 7.73 -51.93 -0.40 0.01 16 33 H 0.09 1.98 7.14 -51.93 -0.37 1.61 16 LS Contribution 263.38 15.07 3.97 3.97 Total: -1.00 -28.60 263.38 -7.42 -36.02 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.55 Total: -1.88 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.30 Total: -7.50 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -1.03 Total: -50.87 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.11 Total: 20.27 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.60 -7.42 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.811 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds