Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30255 * 121.05404 * 2 1 4 4 S 1.69956 * 105.75530 * 180.02562 * 3 2 1 5 5 C 1.72307 * 94.56335 * 359.97438 * 4 3 2 6 6 N 1.38108 * 127.50547 * 179.97438 * 5 4 3 7 7 C 1.46492 * 120.00108 * 180.02562 * 6 5 4 8 8 C 1.36917 * 119.99754 * 0.02743 * 6 5 4 9 9 H 1.07998 * 120.00123 * 334.25785 * 8 6 5 10 10 C 1.38797 * 119.99796 * 154.25681 * 8 6 5 11 11 N 1.31564 * 119.99972 * 157.46177 * 10 8 6 12 12 Si 1.86802 * 120.00015 * 337.74196 * 10 8 6 13 13 H 1.48497 * 109.47029 * 84.66670 * 12 10 8 14 14 H 1.48496 * 109.46941 * 204.66981 * 12 10 8 15 15 H 1.48501 * 109.47085 * 324.66881 * 12 10 8 16 16 N 1.31115 * 121.06261 * 180.28292 * 2 1 3 17 17 H 1.08998 * 109.46948 * 89.98231 * 1 2 3 18 18 H 1.09001 * 109.47232 * 209.97630 * 1 2 3 19 19 H 1.08998 * 109.47313 * 329.98226 * 1 2 3 20 20 H 1.09006 * 109.47327 * 268.79668 * 7 6 5 21 21 H 1.08997 * 109.47326 * 28.79697 * 7 6 5 22 22 H 1.09004 * 109.47252 * 148.79990 * 7 6 5 23 23 H 0.96999 * 120.00341 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1789 1.1159 0.0000 4 16 3.8182 0.6674 -0.0007 5 6 3.4973 -1.0255 -0.0002 6 7 4.4171 -2.0557 -0.0010 7 6 3.9586 -3.4470 -0.0009 8 6 5.7575 -1.7766 -0.0017 9 1 6.1142 -0.8417 -0.4079 10 6 6.6579 -2.6953 0.5197 11 7 7.9186 -2.6665 0.1445 12 14 6.0781 -3.9775 1.7482 13 1 5.5180 -5.1437 1.0192 14 1 7.2252 -4.4188 2.5815 15 1 5.0300 -3.3891 2.6203 16 7 2.1835 -1.1231 -0.0055 17 1 -0.3633 0.0003 -1.0277 18 1 -0.3634 -0.8902 0.5135 19 1 -0.3634 0.8898 0.5141 20 1 3.8659 -3.7991 1.0265 21 1 2.9892 -3.5102 -0.4954 22 1 4.6794 -4.0672 -0.5339 23 1 8.5479 -3.3082 0.5091 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147237.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = 43.298516 kcal Electronic energy + Delta-G solvation = -10610.095062 eV Core-core repulsion = 8584.858091 eV Total energy + Delta-G solvation = -2025.236971 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.69991 -38.62000 -34.62870 -32.45422 -30.23431 -28.95939 -27.21549 -23.29591 -20.50298 -20.04894 -18.80015 -17.92640 -17.05460 -16.41710 -15.40866 -15.03808 -14.76331 -14.64346 -13.77019 -13.39768 -13.27556 -12.80260 -12.57085 -12.31108 -12.20632 -12.08136 -11.48297 -11.07961 -10.25056 -10.20596 -9.14261 -8.81554 -6.24710 0.06114 0.51736 1.18980 1.32600 1.35367 1.40718 2.00264 2.03593 2.21893 2.71123 3.57598 4.19623 4.25401 4.53824 4.63283 4.76452 4.80496 5.04991 5.30587 5.42991 5.67153 6.10812 6.68692 6.77270 7.27825 8.29761 Molecular weight = 199.05amu Principal moments of inertia in cm(-1) A = 0.057182 B = 0.012270 C = 0.010710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.547246 B = 2281.439353 C = 2613.824107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.296 3.704 3 N -0.573 5.573 4 S 0.090 5.910 5 C 0.281 3.719 6 N -0.378 5.378 7 C 0.063 3.937 8 C -0.344 4.344 9 H 0.090 0.910 10 C 0.037 3.963 11 N -0.861 5.861 12 Si 0.948 3.052 13 H -0.232 1.232 14 H -0.277 1.277 15 H -0.274 1.274 16 N -0.637 5.637 17 H 0.096 0.904 18 H 0.094 0.906 19 H 0.090 0.910 20 H 0.062 0.938 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 -3.249 1.349 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.007 3.993 3 N -0.413 5.413 4 S 0.224 5.776 5 C -0.092 4.092 6 N -0.074 5.074 7 C -0.081 4.081 8 C -0.475 4.475 9 H 0.108 0.892 10 C -0.174 4.174 11 N -0.494 5.494 12 Si 0.770 3.230 13 H -0.156 1.156 14 H -0.203 1.203 15 H -0.199 1.199 16 N -0.382 5.382 17 H 0.115 0.885 18 H 0.113 0.887 19 H 0.109 0.891 20 H 0.080 0.920 21 H 0.115 0.885 22 H 0.111 0.889 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.318 -2.335 1.312 7.792 hybrid contribution -0.014 -1.069 0.411 1.145 sum -7.332 -3.404 1.723 8.265 Atomic orbital electron populations 1.20409 0.81865 1.04577 1.04635 1.23793 1.00892 0.82577 0.92018 1.77424 0.96839 1.25756 1.41233 1.84553 1.14310 1.00716 1.78004 1.25068 0.90376 0.94224 0.99566 1.42163 1.02908 1.02730 1.59584 1.22387 1.02663 0.80639 1.02380 1.19206 0.78329 1.08072 1.41880 0.89228 1.25929 0.94655 0.99546 0.97223 1.69831 1.04763 1.36407 1.38368 0.85997 0.78150 0.79582 0.79262 1.15568 1.20297 1.19931 1.67241 1.02385 1.30095 1.38473 0.88550 0.88749 0.89076 0.92030 0.88530 0.88925 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.46 10.42 71.24 0.74 -0.72 14 2 C 0.30 12.00 7.56 139.41 1.05 13.05 14 3 N -0.57 -25.47 12.16 -60.26 -0.73 -26.20 14 4 S 0.09 4.22 22.77 -56.49 -1.29 2.93 14 5 C 0.28 13.31 7.89 178.90 1.41 14.72 14 6 N -0.38 -17.65 2.87 -545.38 -1.57 -19.21 14 7 C 0.06 2.40 8.24 127.77 1.05 3.45 14 8 C -0.34 -17.57 9.65 84.03 0.81 -16.76 14 9 H 0.09 5.04 7.51 -2.91 -0.02 5.02 14 10 C 0.04 1.81 5.21 84.87 0.44 2.25 14 11 N -0.86 -43.96 13.96 21.64 0.30 -43.66 14 12 Si 0.95 36.96 24.03 68.60 1.65 38.61 14 13 H -0.23 -7.79 6.51 99.48 0.65 -7.14 14 14 H -0.28 -10.54 7.11 99.48 0.71 -9.83 14 15 H -0.27 -11.16 6.91 99.48 0.69 -10.48 14 16 N -0.64 -28.13 10.02 -199.88 -2.00 -30.13 14 17 H 0.10 2.27 8.14 -2.39 -0.02 2.25 14 18 H 0.09 2.28 8.14 -2.39 -0.02 2.26 14 19 H 0.09 2.21 8.14 -2.39 -0.02 2.19 14 20 H 0.06 2.23 5.19 -2.38 -0.01 2.22 14 21 H 0.10 3.38 7.69 -2.39 -0.02 3.36 14 22 H 0.09 3.32 6.54 -2.38 -0.02 3.30 14 23 H 0.30 13.63 8.31 -92.71 -0.77 12.86 14 Total: -1.00 -58.67 214.98 3.02 -55.65 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.15 Total: 6.01 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.51 Total: 16.00 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -4.00 Total: -119.20 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.65 Total: 38.61 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.29 Total: 2.93 kcal Total: -58.67 3.02 -55.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147237.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.951 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds