Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36545 * 127.14313 * 2 1 4 4 S 1.76202 * 126.48355 * 0.02562 * 3 2 1 5 5 N 1.31281 * 107.02974 * 180.22609 * 3 2 1 6 6 N 1.28519 * 109.86052 * 359.77549 * 5 3 2 7 7 C 1.30302 * 110.07565 * 359.97438 * 6 5 3 8 8 C 1.50706 * 126.33954 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46817 * 90.02886 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46946 * 59.99892 * 13 11 9 15 15 H 1.48496 * 109.46933 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46921 * 299.99575 * 13 11 9 17 17 H 1.08995 * 109.47511 * 270.14819 * 1 2 3 18 18 H 1.09002 * 109.46789 * 30.15101 * 1 2 3 19 19 H 1.09000 * 109.47131 * 150.15016 * 1 2 3 20 20 H 1.41003 * 99.99798 * 270.24251 * 4 3 2 21 21 H 1.09000 * 109.47318 * 210.02266 * 8 7 6 22 22 H 1.09000 * 109.47161 * 330.02897 * 8 7 6 23 23 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7790 0.0006 5 7 3.5222 0.6370 -0.0050 6 7 3.5165 -0.6482 -0.0033 7 6 2.2908 -1.0901 0.0034 8 6 1.8623 -2.5349 0.0068 9 6 1.7261 -3.0150 1.4288 10 1 1.9298 -2.3414 2.2480 11 6 1.3424 -4.3145 1.6839 12 7 1.0948 -5.1350 0.6863 13 14 1.1728 -4.9094 3.4466 14 1 0.1535 -4.0898 4.1497 15 1 0.7508 -6.3331 3.4499 16 1 2.4788 -4.7781 4.1411 17 1 -0.3634 0.0027 1.0276 18 1 -0.3633 0.8887 -0.5162 19 1 -0.3633 -0.8913 -0.5115 20 1 1.7176 3.0126 -1.3879 21 1 0.9034 -2.6308 -0.5024 22 1 2.6099 -3.1368 -0.5099 23 1 0.8253 -6.0492 0.8658 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215138.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = 52.375756 kcal Electronic energy + Delta-G solvation = -10513.971561 eV Core-core repulsion = 8489.128209 eV Total energy + Delta-G solvation = -2024.843352 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.89460 -36.16993 -35.42722 -32.90323 -29.63991 -28.41654 -25.60487 -23.71050 -21.83356 -19.12532 -18.68218 -17.72393 -17.14084 -16.66266 -15.84059 -15.02578 -14.44539 -14.28061 -13.85702 -13.46280 -12.95665 -12.74928 -12.68571 -12.41606 -12.05668 -11.73450 -11.54648 -11.11499 -10.66416 -10.13194 -9.38929 -8.29171 -6.42227 -0.01797 0.39441 1.38577 1.42553 1.45144 1.52444 1.71214 1.88683 2.39059 3.04614 3.62821 3.81389 4.07182 4.33929 4.59728 4.66820 4.99050 5.12523 5.31508 5.60914 5.74321 5.99183 6.63123 7.26730 7.58092 8.80863 Molecular weight = 199.05amu Principal moments of inertia in cm(-1) A = 0.059211 B = 0.008977 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.774165 B = 3118.372371 C = 3177.509423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.461 5.461 3 C 0.118 3.882 4 S 0.017 5.983 5 N -0.286 5.286 6 N -0.349 5.349 7 C 0.237 3.763 8 C 0.108 3.892 9 C -0.536 4.536 10 H 0.047 0.953 11 C 0.022 3.978 12 N -0.918 5.918 13 Si 0.965 3.035 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.277 1.277 17 H 0.094 0.906 18 H 0.124 0.876 19 H 0.096 0.904 20 H 0.123 0.877 21 H 0.045 0.955 22 H 0.031 0.969 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 11.665 -1.549 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.153 5.153 3 C -0.257 4.257 4 S 0.165 5.835 5 N -0.130 5.130 6 N -0.191 5.191 7 C -0.033 4.033 8 C 0.068 3.932 9 C -0.575 4.575 10 H 0.065 0.935 11 C -0.179 4.179 12 N -0.556 5.556 13 Si 0.789 3.211 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.203 1.203 17 H 0.113 0.887 18 H 0.142 0.858 19 H 0.115 0.885 20 H 0.088 0.912 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.014 12.351 -1.384 13.402 hybrid contribution -0.895 -1.510 -0.187 1.765 sum -5.908 10.841 -1.571 12.446 Atomic orbital electron populations 1.22445 0.72469 1.06457 1.05893 1.47133 1.10618 1.04924 1.52631 1.26396 0.89594 0.96078 1.13619 1.86550 1.87669 0.95102 1.14134 1.74527 1.18756 1.03424 1.16327 1.74009 1.19506 1.03203 1.22333 1.26044 0.86287 0.93814 0.97135 1.17667 0.97093 0.80190 0.98242 1.20982 1.48048 0.97283 0.91156 0.93499 1.25721 0.94131 0.96234 1.01803 1.70006 1.45914 1.06679 1.32986 0.85497 0.78742 0.77650 0.79178 1.18827 1.20011 1.20277 0.88729 0.85818 0.88506 0.91245 0.93726 0.95098 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 10.91 127.77 1.39 3.17 14 2 N -0.46 -17.13 3.21 -536.43 -1.72 -18.85 14 3 C 0.12 4.31 8.37 179.55 1.50 5.81 14 4 S 0.02 0.40 25.78 -56.49 -1.46 -1.06 14 5 N -0.29 -12.83 12.23 -56.85 -0.70 -13.53 14 6 N -0.35 -17.47 12.18 -49.52 -0.60 -18.07 14 7 C 0.24 11.04 7.26 137.63 1.00 12.04 14 8 C 0.11 5.47 5.35 29.10 0.16 5.63 14 9 C -0.54 -29.30 9.09 25.60 0.23 -29.07 14 10 H 0.05 2.62 7.74 -2.91 -0.02 2.59 14 11 C 0.02 1.16 5.46 84.65 0.46 1.63 14 12 N -0.92 -51.33 13.29 21.45 0.28 -51.04 14 13 Si 0.97 42.36 29.54 68.60 2.03 44.38 14 14 H -0.26 -11.00 7.11 99.48 0.71 -10.29 14 15 H -0.28 -11.59 7.11 99.48 0.71 -10.88 14 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 14 17 H 0.09 2.32 8.14 -2.39 -0.02 2.30 14 18 H 0.12 2.17 7.86 -2.39 -0.02 2.15 14 19 H 0.10 2.53 7.25 -2.39 -0.02 2.51 14 20 H 0.12 2.20 9.55 73.80 0.70 2.91 14 21 H 0.04 2.19 7.26 -2.39 -0.02 2.17 14 22 H 0.03 1.72 8.14 -2.39 -0.02 1.70 14 23 H 0.27 14.24 8.31 -92.71 -0.77 13.47 14 Total: -1.00 -66.42 228.24 4.52 -61.90 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: 1.94 Total: -2.94 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.75 Total: -0.79 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -2.74 Total: -101.49 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.46 Total: -1.06 kcal Total: -66.42 4.52 -61.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215138.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.276 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds