Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47845 * 110.99814 * 2 1 4 4 C 1.55112 * 104.90610 * 146.24228 * 3 2 1 5 5 C 1.55144 * 101.55583 * 323.15721 * 4 3 2 6 6 H 1.09001 * 110.70286 * 276.96654 * 5 4 3 7 7 C 1.52999 * 110.70356 * 153.90645 * 5 4 3 8 8 H 1.08997 * 109.47752 * 302.40089 * 7 5 4 9 9 C 1.50696 * 109.47327 * 62.40415 * 7 5 4 10 10 H 1.08001 * 120.00335 * 32.69420 * 9 7 5 11 11 C 1.37877 * 120.00011 * 212.69310 * 9 7 5 12 12 N 1.31509 * 119.99984 * 352.08305 * 11 9 7 13 13 Si 1.86801 * 119.99819 * 172.08240 * 11 9 7 14 14 H 1.48499 * 109.47328 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47167 * 239.99952 * 13 11 9 16 16 H 1.48507 * 109.47001 * 120.00206 * 13 11 9 17 17 C 1.53007 * 109.46760 * 182.40131 * 7 5 4 18 18 N 1.46894 * 109.47316 * 66.08872 * 17 7 5 19 19 C 1.47447 * 110.99737 * 120.84055 * 2 1 3 20 20 H 1.09004 * 109.46980 * 299.16129 * 1 2 3 21 21 H 1.09006 * 109.47192 * 59.15659 * 1 2 3 22 22 H 1.08992 * 109.47244 * 179.16020 * 1 2 3 23 23 H 1.09005 * 110.37172 * 265.19272 * 3 2 1 24 24 H 1.09003 * 110.37706 * 27.42061 * 3 2 1 25 25 H 1.08989 * 111.14998 * 205.04914 * 4 3 2 26 26 H 1.09000 * 110.92415 * 81.16158 * 4 3 2 27 27 H 0.97001 * 120.00432 * 4.31354 * 12 11 9 28 28 H 1.09000 * 109.47056 * 186.08398 * 17 7 5 29 29 H 1.09000 * 109.47216 * 306.08266 * 17 7 5 30 30 H 1.00904 * 111.00179 * 56.03792 * 18 17 7 31 31 H 1.00898 * 111.00162 * 180.02562 * 18 17 7 32 32 H 1.08996 * 109.88233 * 117.33528 * 19 2 1 33 33 H 1.08992 * 109.88785 * 356.14830 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3053 1.3062 0.8329 5 6 2.9158 0.2822 1.9314 6 1 2.3752 0.7725 2.7411 7 6 4.1570 -0.4337 2.4679 8 1 4.6757 -0.9271 1.6460 9 6 5.0774 0.5708 3.1120 10 1 4.6675 1.4360 3.6119 11 6 6.4427 0.3854 3.0631 12 7 6.9372 -0.7395 2.5944 13 14 7.5902 1.7320 3.6625 14 1 6.7899 2.8887 4.1386 15 1 8.4711 2.1642 2.5478 16 1 8.4219 1.2134 4.7781 17 6 3.7355 -1.4773 3.5046 18 7 2.9585 -2.5357 2.8460 19 6 1.9974 -0.7057 1.1819 20 1 -0.3633 0.5008 0.8974 21 1 -0.3634 0.5269 -0.8824 22 1 -0.3633 -1.0275 -0.0151 23 1 2.2148 1.7038 -1.0183 24 1 1.2881 2.0596 0.4706 25 1 3.5482 2.2745 1.2703 26 1 4.1321 0.9342 0.2279 27 1 6.3448 -1.4132 2.2254 28 1 4.6232 -1.9112 3.9648 29 1 3.1244 -1.0014 4.2715 30 1 3.4804 -2.9490 2.0877 31 1 2.6678 -3.2374 3.5101 32 1 2.5696 -1.5784 0.8675 33 1 1.1756 -1.0119 1.8290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = -27.905698 kcal Electronic energy + Delta-G solvation = -13403.948074 eV Core-core repulsion = 11269.962686 eV Total energy + Delta-G solvation = -2133.985388 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13248 -37.06660 -34.37518 -32.99129 -30.27647 -28.68624 -26.04377 -25.68362 -22.60065 -21.80276 -20.95164 -18.96756 -16.88345 -16.51485 -16.25647 -15.61561 -15.44547 -14.98007 -14.74240 -14.25034 -13.90152 -13.61174 -13.17141 -13.12527 -12.70119 -12.41772 -12.10750 -11.98017 -11.94683 -11.67024 -11.38449 -11.12958 -10.60630 -10.33437 -9.46597 -9.15794 -8.58336 -6.26622 1.52366 1.60112 1.76249 2.56844 3.20927 3.23871 3.88803 3.96327 3.97825 4.14564 4.42027 4.56226 4.59717 4.68449 4.70316 4.75223 4.88090 4.99635 5.01115 5.09125 5.17621 5.32772 5.44426 5.54969 5.74698 6.06895 6.11155 6.25771 6.28797 6.34965 6.63912 6.76158 7.51576 8.81716 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040509 B = 0.011422 C = 0.009539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.036031 B = 2450.851776 C = 2934.543610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.557 5.557 3 C 0.046 3.954 4 C -0.108 4.108 5 C -0.080 4.080 6 H 0.043 0.957 7 C 0.045 3.955 8 H 0.007 0.993 9 C -0.592 4.592 10 H 0.040 0.960 11 C -0.029 4.029 12 N -0.939 5.939 13 Si 1.111 2.889 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.284 1.284 17 C 0.081 3.919 18 N -0.837 5.837 19 C 0.079 3.921 20 H 0.022 0.978 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.258 0.742 28 H -0.011 1.011 29 H 0.049 0.951 30 H 0.336 0.664 31 H 0.338 0.662 32 H 0.069 0.931 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 1.470 -2.522 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.281 5.281 3 C -0.081 4.081 4 C -0.146 4.146 5 C -0.099 4.099 6 H 0.061 0.939 7 C 0.026 3.974 8 H 0.025 0.975 9 C -0.631 4.631 10 H 0.058 0.942 11 C -0.227 4.227 12 N -0.578 5.578 13 Si 0.934 3.066 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.210 1.210 17 C -0.050 4.050 18 N -0.366 5.366 19 C -0.048 4.048 20 H 0.041 0.959 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.008 0.992 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.699 2.156 -2.891 9.417 hybrid contribution -0.807 -0.781 0.993 1.499 sum -9.506 1.375 -1.897 9.790 Atomic orbital electron populations 1.22535 0.86944 1.02326 1.00633 1.63677 1.08849 1.14362 1.41252 1.23079 0.95201 0.89660 1.00189 1.22509 0.96597 0.99039 0.96452 1.22133 0.96096 0.95702 0.96008 0.93852 1.18804 0.92335 0.92970 0.93308 0.97480 1.22199 0.93484 1.09144 1.38244 0.94181 1.27056 0.99218 1.00859 0.95609 1.70873 1.39340 1.07177 1.40360 0.82998 0.74094 0.73109 0.76361 1.19791 1.20730 1.20990 1.21826 0.92954 0.92994 0.97193 1.59113 1.46315 1.16400 1.14803 1.22703 0.97087 0.96172 0.88865 0.95910 0.90396 0.90993 0.89872 0.93151 0.91905 0.93612 0.93157 0.99228 0.93222 0.85193 0.85014 0.91289 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.12 127.69 1.16 1.79 16 2 N -0.56 -18.47 5.45 -911.25 -4.96 -23.44 16 3 C 0.05 1.50 6.73 86.84 0.58 2.08 16 4 C -0.11 -4.32 5.97 32.05 0.19 -4.13 16 5 C -0.08 -3.36 2.47 -9.61 -0.02 -3.39 16 6 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 7 C 0.05 2.21 1.21 -11.54 -0.01 2.20 16 8 H 0.01 0.38 6.62 -2.39 -0.02 0.37 16 9 C -0.59 -32.35 7.72 25.60 0.20 -32.15 16 10 H 0.04 2.21 7.83 -2.91 -0.02 2.19 16 11 C -0.03 -1.64 5.44 84.66 0.46 -1.18 16 12 N -0.94 -56.45 13.62 21.45 0.29 -56.16 16 13 Si 1.11 50.31 29.91 68.60 2.05 52.36 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 C 0.08 3.59 6.13 86.31 0.53 4.12 16 18 N -0.84 -29.23 6.88 -186.72 -1.28 -30.51 16 19 C 0.08 2.91 4.89 86.64 0.42 3.33 16 20 H 0.02 0.58 8.10 -2.38 -0.02 0.56 16 21 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 24 H 0.05 1.49 7.78 -2.39 -0.02 1.47 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 27 H 0.26 15.59 6.67 -92.71 -0.62 14.97 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.34 11.71 8.38 -89.69 -0.75 10.96 16 31 H 0.34 9.96 9.08 -89.70 -0.81 9.14 16 32 H 0.07 2.71 6.22 -2.39 -0.01 2.70 16 33 H 0.05 1.91 7.43 -2.39 -0.02 1.89 16 Total: -1.00 -60.67 260.00 -0.72 -61.39 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.33 Total: 23.68 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.51 Total: -27.32 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -5.95 Total: -110.11 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Total: -60.67 -0.72 -61.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds