Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72514 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.72010 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72270 * 3 2 1 7 7 C 1.38759 * 119.99703 * 179.72080 * 2 1 3 8 8 H 1.07999 * 119.99938 * 180.27489 * 7 2 1 9 9 O 1.34914 * 120.00087 * 0.27729 * 7 2 1 10 10 C 1.34313 * 117.00017 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00246 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00214 * 179.97438 * 10 9 7 13 13 H 1.08999 * 110.85641 * 56.21324 * 12 10 9 14 14 C 1.54471 * 110.97087 * 180.02562 * 12 10 9 15 15 N 1.46764 * 105.47393 * 143.53533 * 14 12 10 16 16 C 1.34421 * 111.29943 * 342.98284 * 15 14 12 17 17 O 1.21282 * 124.93860 * 180.40423 * 16 15 14 18 18 C 1.51276 * 110.11512 * 0.40947 * 16 15 14 19 19 H 0.97000 * 119.99816 * 179.97438 * 1 2 3 20 20 H 1.08997 * 110.24902 * 262.53689 * 14 12 10 21 21 H 1.09004 * 110.25089 * 24.45082 * 14 12 10 22 22 H 0.97002 * 124.34834 * 162.96488 * 15 14 12 23 23 H 1.09008 * 110.48292 * 257.57096 * 18 16 15 24 24 H 1.09000 * 110.48972 * 134.93466 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1073 1.6934 -1.2091 5 1 1.2835 2.7464 -0.0068 6 1 3.0972 1.6993 1.2159 7 6 2.0082 -1.2017 0.0059 8 1 3.0881 -1.2017 0.0103 9 8 1.3335 -2.3701 0.0059 10 6 2.0650 -3.4965 0.0112 11 8 3.2755 -3.4332 0.0161 12 6 1.3808 -4.8393 0.0122 13 1 0.7029 -4.9301 -0.8365 14 6 2.4150 -5.9867 0.0192 15 7 1.8290 -7.0369 0.8604 16 6 0.8304 -6.5539 1.6196 17 8 0.1809 -7.2057 2.4097 18 6 0.6347 -5.0792 1.3451 19 1 -0.4850 -0.8401 -0.0004 20 1 2.5728 -6.3586 -0.9932 21 1 3.3575 -5.6426 0.4452 22 1 2.1242 -7.9609 0.8674 23 1 1.0758 -4.4809 2.1423 24 1 -0.4251 -4.8489 1.2359 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306150870.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -124.358313 kcal Electronic energy + Delta-G solvation = -12496.174845 eV Core-core repulsion = 9988.622106 eV Total energy + Delta-G solvation = -2507.552739 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 199.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.40888 -38.92538 -36.39154 -35.20493 -32.26886 -31.41569 -27.58442 -25.27066 -23.11467 -20.54291 -19.84111 -18.13701 -17.45980 -17.07941 -15.58968 -15.13423 -14.69120 -14.63709 -13.85341 -13.52404 -13.40566 -12.94226 -12.72380 -11.58450 -11.32862 -11.10790 -10.87340 -10.52783 -10.28384 -9.91705 -9.85167 -9.24167 -9.02542 -8.61163 -6.82630 -4.20829 2.64080 3.07321 3.24340 3.33255 3.40870 3.48027 3.83802 4.30299 4.43435 4.67629 5.03508 5.11170 5.22854 5.56333 5.71202 5.92131 6.05217 6.43828 6.77467 6.98428 7.51874 8.26144 8.31643 8.37303 8.94974 9.61114 10.61947 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.069112 B = 0.008478 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.044756 B = 3301.861579 C = 3557.722937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.015 3.985 3 Si 1.099 2.901 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.465 4.465 8 H 0.089 0.911 9 O -0.229 6.229 10 C 0.407 3.593 11 O -0.547 6.547 12 C -0.086 4.086 13 H 0.114 0.886 14 C 0.114 3.886 15 N -0.731 5.731 16 C 0.524 3.476 17 O -0.540 6.540 18 C -0.143 4.143 19 H 0.281 0.719 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.410 0.590 23 H 0.110 0.890 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -8.088 -1.132 8.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.191 4.191 3 Si 0.922 3.078 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.541 4.541 8 H 0.107 0.893 9 O -0.136 6.136 10 C 0.252 3.748 11 O -0.445 6.445 12 C -0.106 4.106 13 H 0.132 0.868 14 C -0.010 4.010 15 N -0.387 5.387 16 C 0.310 3.690 17 O -0.417 6.417 18 C -0.183 4.183 19 H 0.091 0.909 20 H 0.103 0.897 21 H 0.112 0.888 22 H 0.248 0.752 23 H 0.129 0.871 24 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.263 -6.587 -0.719 7.002 hybrid contribution 0.447 -2.120 -0.137 2.171 sum 2.709 -8.707 -0.855 9.159 Atomic orbital electron populations 1.70563 1.06617 1.31628 1.42256 1.26644 0.96737 1.01212 0.94490 0.83075 0.74415 0.72968 0.77318 1.20655 1.19827 1.20653 1.22144 0.93831 0.81075 1.57071 0.89331 1.83584 1.40360 1.14078 1.75600 1.22351 0.86392 0.86266 0.79740 1.90567 1.15344 1.87587 1.50956 1.21617 0.97787 0.91223 0.99971 0.86753 1.22010 0.97016 0.86193 0.95824 1.46234 1.36550 1.12525 1.43400 1.20897 0.78907 0.90016 0.79162 1.90733 1.49521 1.65190 1.36267 1.22308 1.04028 0.93974 0.98011 0.90859 0.89678 0.88773 0.75183 0.87135 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.69 55.48 0.76 -24.65 14 2 C 0.02 0.42 5.49 -17.53 -0.10 0.32 14 3 Si 1.10 23.82 29.92 -169.99 -5.09 18.73 14 4 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.27 -5.81 7.11 56.52 0.40 -5.40 14 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 14 7 C -0.47 -13.32 9.65 30.92 0.30 -13.02 14 8 H 0.09 2.58 6.86 -52.49 -0.36 2.22 14 9 O -0.23 -6.10 9.15 -20.69 -0.19 -6.29 14 10 C 0.41 9.18 7.13 36.01 0.26 9.44 14 11 O -0.55 -13.62 14.74 -19.05 -0.28 -13.90 14 12 C -0.09 -1.39 3.66 -90.14 -0.33 -1.72 14 13 H 0.11 1.61 8.14 -51.93 -0.42 1.19 14 14 C 0.11 1.51 7.15 -3.13 -0.02 1.49 14 15 N -0.73 -9.21 6.24 -59.21 -0.37 -9.58 14 16 C 0.52 8.21 8.43 -10.86 -0.09 8.12 14 17 O -0.54 -10.20 18.03 5.56 0.10 -10.10 14 18 C -0.14 -2.24 6.41 -26.75 -0.17 -2.41 14 19 H 0.28 8.18 7.97 -40.82 -0.33 7.85 14 20 H 0.08 0.92 8.14 -51.93 -0.42 0.49 14 21 H 0.09 1.40 6.96 -51.93 -0.36 1.04 14 22 H 0.41 4.12 8.96 -40.82 -0.37 3.75 14 23 H 0.11 1.84 7.89 -51.92 -0.41 1.43 14 24 H 0.11 1.65 8.14 -51.93 -0.42 1.23 14 LS Contribution 224.06 15.07 3.38 3.38 Total: -1.00 -33.43 224.06 -3.73 -37.16 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.89 Total: 3.04 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.16 Total: 2.21 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.39 Total: -34.24 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.37 Total: -30.28 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -33.43 -3.73 -37.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306150870.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.196 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds