Wall clock time and date at job start Mon Mar 30 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48493 * 109.47158 * 269.99943 * 3 2 1 5 5 H 1.48507 * 109.47087 * 29.99954 * 3 2 1 6 6 H 1.48501 * 109.47116 * 149.99760 * 3 2 1 7 7 C 1.40242 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.39910 * 120.00346 * 0.02562 * 7 2 1 10 10 N 1.31861 * 125.55699 * 179.97438 * 9 7 2 11 11 C 1.30462 * 115.68932 * 180.02562 * 10 9 7 12 12 C 1.50698 * 122.10401 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47089 * 304.97461 * 12 11 10 14 14 O 1.42896 * 109.47001 * 179.97438 * 13 12 11 15 15 C 1.34854 * 115.79391 * 359.97438 * 11 10 9 16 16 S 1.71043 * 109.23637 * 0.02562 * 15 11 10 17 17 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46655 * 64.97163 * 12 11 10 19 19 H 1.08993 * 109.47116 * 184.97134 * 12 11 10 20 20 H 1.09004 * 109.46959 * 299.99923 * 13 12 11 21 21 H 1.08998 * 109.47187 * 59.99437 * 13 12 11 22 22 H 0.96703 * 114.00194 * 179.97438 * 14 13 12 23 23 H 1.07996 * 125.38425 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 -1.4000 5 1 1.4383 2.6527 0.7001 6 1 3.5385 1.4403 0.7001 7 6 2.0083 -1.2145 0.0005 8 1 3.0883 -1.2144 0.0001 9 6 1.3088 -2.4262 0.0005 10 7 1.8546 -3.6266 0.0005 11 6 1.0184 -4.6280 0.0000 12 6 1.4849 -6.0610 0.0005 13 6 2.4299 -6.2900 -1.1808 14 8 2.8728 -7.6487 -1.1799 15 6 -0.2897 -4.3002 0.0001 16 16 -0.4438 -2.5967 0.0002 17 1 -0.4850 0.8400 0.0004 18 1 2.0101 -6.2717 0.9321 19 1 0.6240 -6.7234 -0.0891 20 1 1.9047 -6.0792 -2.1124 21 1 3.2908 -5.6275 -1.0911 22 1 3.4763 -7.8661 -1.9035 23 1 -1.1103 -5.0023 0.0001 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306396347.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:31 Heat of formation + Delta-G solvation = -65.391545 kcal Electronic energy + Delta-G solvation = -10297.221566 eV Core-core repulsion = 8234.978689 eV Total energy + Delta-G solvation = -2062.242877 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.82685 -37.73963 -36.05137 -32.93328 -30.07740 -28.28258 -24.70961 -23.31830 -19.91084 -19.66472 -18.21285 -17.49628 -16.95113 -16.11205 -15.45493 -15.10352 -14.26642 -14.17451 -14.01297 -13.50214 -13.09106 -12.76662 -12.40556 -12.21786 -11.99278 -11.36399 -11.34521 -10.91155 -9.88848 -9.78263 -9.11551 -8.90439 -6.73851 0.61888 1.40593 1.49942 1.53634 1.59340 2.01646 2.19088 2.25260 3.10451 3.44915 3.98553 4.22199 4.35627 4.57308 4.85557 4.94845 4.95395 5.02995 5.39957 5.69202 5.92619 6.38544 6.46052 6.86713 7.77587 8.01024 Molecular weight = 199.04amu Principal moments of inertia in cm(-1) A = 0.057036 B = 0.009828 C = 0.008562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.802340 B = 2848.231581 C = 3269.387454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.019 3.981 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.255 1.255 7 C -0.397 4.397 8 H 0.104 0.896 9 C 0.172 3.828 10 N -0.626 5.626 11 C 0.101 3.899 12 C -0.035 4.035 13 C 0.100 3.900 14 O -0.586 6.586 15 C -0.480 4.480 16 S 0.083 5.917 17 H 0.312 0.688 18 H 0.068 0.932 19 H 0.080 0.920 20 H 0.041 0.959 21 H 0.044 0.956 22 H 0.398 0.602 23 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -0.211 -2.165 3.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.201 4.201 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.178 1.178 7 C -0.440 4.440 8 H 0.122 0.878 9 C -0.080 4.080 10 N -0.350 5.350 11 C -0.039 4.039 12 C -0.075 4.075 13 C 0.022 3.978 14 O -0.395 6.395 15 C -0.623 4.623 16 S 0.341 5.659 17 H 0.126 0.874 18 H 0.087 0.913 19 H 0.099 0.901 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.247 0.753 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.214 0.525 -1.637 2.104 hybrid contribution 0.560 -0.496 -0.432 0.863 sum 1.773 0.029 -2.069 2.725 Atomic orbital electron populations 1.68841 1.09179 1.32818 1.31602 1.27260 0.95929 1.05684 0.91260 0.84594 0.78529 0.73011 0.80078 1.17967 1.18138 1.17820 1.19405 0.96177 0.88248 1.40151 0.87777 1.24435 0.92191 0.95002 0.96323 1.67293 1.35736 0.97606 1.34402 1.20006 0.89084 0.95523 0.99255 1.19915 0.99080 0.89773 0.98741 1.21785 0.96708 0.82249 0.97043 1.86364 1.68941 1.28004 1.56179 1.25990 1.00162 1.03763 1.32423 1.83964 1.11304 0.96036 1.74631 0.87426 0.91309 0.90123 0.94036 0.93793 0.75260 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.69 10.67 21.88 0.23 -37.46 14 2 C 0.02 0.89 5.50 85.35 0.47 1.35 14 3 Si 1.02 33.91 29.56 68.60 2.03 35.94 14 4 H -0.26 -8.13 7.11 99.48 0.71 -7.42 14 5 H -0.26 -7.92 7.11 99.48 0.71 -7.22 14 6 H -0.25 -8.34 7.11 99.48 0.71 -7.64 14 7 C -0.40 -20.74 9.45 23.16 0.22 -20.52 14 8 H 0.10 5.24 7.85 -2.91 -0.02 5.21 14 9 C 0.17 9.65 7.14 85.09 0.61 10.25 14 10 N -0.63 -34.69 10.44 -183.44 -1.91 -36.60 14 11 C 0.10 5.10 6.05 41.98 0.25 5.36 14 12 C -0.04 -1.45 6.06 29.85 0.18 -1.27 14 13 C 0.10 3.66 6.94 71.98 0.50 4.16 14 14 O -0.59 -17.99 13.66 -148.98 -2.03 -20.02 14 15 C -0.48 -24.24 10.78 67.04 0.72 -23.52 14 16 S 0.08 4.36 20.19 -56.49 -1.14 3.22 14 17 H 0.31 12.91 8.29 -92.71 -0.77 12.14 14 18 H 0.07 2.81 8.14 -2.39 -0.02 2.79 14 19 H 0.08 3.04 8.01 -2.39 -0.02 3.02 14 20 H 0.04 1.49 8.14 -2.39 -0.02 1.47 14 21 H 0.04 1.71 8.05 -2.39 -0.02 1.69 14 22 H 0.40 7.77 9.12 -74.05 -0.68 7.09 14 23 H 0.15 6.62 8.06 -2.91 -0.02 6.60 14 Total: -1.00 -62.04 223.41 0.68 -61.36 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.55 Total: 17.74 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 2.95 Total: -24.19 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.68 Total: -74.06 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -2.03 Total: -20.02 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.14 Total: 3.22 kcal Total: -62.04 0.68 -61.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306396347.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.028 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds