Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99805 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99952 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 H 1.08998 * 110.22114 * 40.70768 * 12 10 9 14 14 C 1.54484 * 110.24982 * 278.77638 * 12 10 9 15 15 C 1.54626 * 101.76671 * 215.58677 * 14 12 10 16 16 C 1.51283 * 104.19438 * 24.79802 * 15 14 12 17 17 O 1.21286 * 124.94427 * 163.77642 * 16 15 14 18 18 N 1.34564 * 110.14431 * 343.67123 * 16 15 14 19 19 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 20 20 H 1.09006 * 110.96249 * 333.70394 * 14 12 10 21 21 H 1.08996 * 110.97070 * 97.42624 * 14 12 10 22 22 H 1.09003 * 110.48863 * 143.46932 * 15 14 12 23 23 H 1.08999 * 110.48569 * 265.98408 * 15 14 12 24 24 H 0.96991 * 124.43831 * 179.64388 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 1 0.5190 -4.8231 -0.6656 14 6 0.9419 -5.2149 1.4338 15 6 1.1614 -6.7455 1.4397 16 6 2.2164 -6.9731 0.3796 17 8 2.8711 -7.9866 0.2574 18 7 2.3214 -5.8885 -0.4100 19 1 -0.4850 0.8400 -0.0004 20 1 1.5740 -4.7272 2.1760 21 1 -0.1076 -4.9701 1.5968 22 1 1.5224 -7.0753 2.4139 23 1 0.2386 -7.2642 1.1801 24 1 2.9390 -5.8092 -1.1537 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306559234.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -143.386760 kcal Electronic energy + Delta-G solvation = -12478.496482 eV Core-core repulsion = 9970.118607 eV Total energy + Delta-G solvation = -2508.377874 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 199.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.80295 -40.50357 -37.81038 -36.84524 -34.32789 -32.30908 -29.84980 -27.27704 -23.94356 -22.03710 -21.48745 -19.93526 -18.99069 -18.29719 -17.19461 -16.65056 -16.47013 -16.21487 -15.55128 -14.77387 -14.58720 -14.08766 -13.74095 -13.58161 -13.27482 -12.84561 -12.39989 -12.20720 -12.08807 -11.99828 -11.23748 -11.03675 -10.71115 -10.27837 -8.56280 -6.35878 1.23216 1.34008 1.44011 1.53347 1.55857 1.98187 2.26985 2.70509 2.94311 3.32918 3.54199 4.00153 4.02942 4.44474 4.64791 4.81041 5.00401 5.04663 5.14953 5.60566 5.79995 5.91337 6.59599 6.89057 7.09205 7.69017 8.63337 Molecular weight = 199.07amu Principal moments of inertia in cm(-1) A = 0.082809 B = 0.008206 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.045663 B = 3411.466869 C = 3609.188262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.003 3.997 3 Si 1.013 2.987 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.422 4.422 8 H 0.079 0.921 9 O -0.230 6.230 10 C 0.386 3.614 11 O -0.581 6.581 12 C 0.154 3.846 13 H 0.138 0.862 14 C -0.112 4.112 15 C -0.135 4.135 16 C 0.516 3.484 17 O -0.580 6.580 18 N -0.710 5.710 19 H 0.280 0.720 20 H 0.071 0.929 21 H 0.135 0.865 22 H 0.122 0.878 23 H 0.146 0.854 24 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -6.204 2.258 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.199 4.199 3 Si 0.833 3.167 4 H -0.193 1.193 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.096 0.904 9 O -0.137 6.137 10 C 0.233 3.767 11 O -0.479 6.479 12 C 0.047 3.953 13 H 0.156 0.844 14 C -0.150 4.150 15 C -0.175 4.175 16 C 0.305 3.695 17 O -0.461 6.461 18 N -0.364 5.364 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.153 0.847 22 H 0.140 0.860 23 H 0.163 0.837 24 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.722 -6.554 2.295 7.458 hybrid contribution 1.016 0.941 -0.582 1.503 sum -1.705 -5.612 1.713 6.110 Atomic orbital electron populations 1.70044 1.07374 1.29451 1.46196 1.26425 0.96866 1.02027 0.94579 0.84622 0.77681 0.75099 0.79324 1.19306 1.18465 1.18314 1.21401 0.92072 0.81110 1.55211 0.90359 1.83875 1.39894 1.13845 1.76104 1.24452 0.86760 0.88408 0.77103 1.90568 1.17330 1.88453 1.51531 1.21206 0.91613 0.80688 1.01748 0.84443 1.22671 1.05585 0.95191 0.91511 1.22424 0.99650 0.96195 0.99217 1.21619 0.83547 0.81444 0.82889 1.90709 1.50648 1.30719 1.74011 1.46189 1.40700 1.15558 1.33974 0.91025 0.91040 0.84714 0.85984 0.83662 0.75177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.85 13.67 21.62 0.30 -49.56 14 2 C 0.00 0.14 5.49 84.87 0.47 0.60 14 3 Si 1.01 41.74 29.55 68.60 2.03 43.77 14 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 14 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 14 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 7 C -0.42 -24.48 9.65 67.94 0.66 -23.83 14 8 H 0.08 4.70 6.86 -2.91 -0.02 4.68 14 9 O -0.23 -12.53 9.75 14.81 0.14 -12.39 14 10 C 0.39 17.89 7.10 71.23 0.51 18.39 14 11 O -0.58 -30.75 15.80 20.78 0.33 -30.42 14 12 C 0.15 4.88 4.03 44.70 0.18 5.06 14 13 H 0.14 3.63 8.14 -2.39 -0.02 3.61 14 14 C -0.11 -2.69 6.68 31.65 0.21 -2.48 14 15 C -0.14 -2.72 6.86 30.59 0.21 -2.51 14 16 C 0.52 15.71 8.43 87.88 0.74 16.45 14 17 O -0.58 -21.94 18.03 -3.05 -0.05 -22.00 14 18 N -0.71 -22.43 5.48 -442.76 -2.42 -24.86 14 19 H 0.28 14.13 8.31 -92.71 -0.77 13.36 14 20 H 0.07 1.99 7.91 -2.38 -0.02 1.97 14 21 H 0.13 2.48 8.14 -2.39 -0.02 2.46 14 22 H 0.12 2.11 8.14 -2.39 -0.02 2.09 14 23 H 0.15 1.92 8.14 -2.39 -0.02 1.90 14 24 H 0.41 13.31 8.95 -92.71 -0.83 12.48 14 Total: -1.00 -73.84 226.41 3.69 -70.15 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.40 Total: 13.61 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 2.97 Total: 11.68 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.13 Total: -74.41 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: 0.42 Total: -64.80 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.84 3.69 -70.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306559234.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.238 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds