Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.50704 * 109.47411 * 120.00212 * 2 1 3 14 14 C 1.35348 * 123.76441 * 274.73069 * 13 2 1 15 15 S 1.72117 * 104.15395 * 179.89947 * 14 13 2 16 16 N 1.56515 * 95.88287 * 0.32351 * 15 14 13 17 17 N 1.27569 * 109.22090 * 359.80334 * 16 15 14 18 18 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 19 19 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 20 20 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 21 21 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 22 22 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 23 23 H 1.07999 * 127.92102 * 359.97438 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 3.7570 1.3957 -4.9279 11 1 3.3164 -0.6440 -6.1637 12 1 1.4824 0.8102 -5.5308 13 6 2.0324 -0.7105 1.2304 14 6 2.1957 -0.1094 2.4321 15 16 2.7784 -1.3651 3.4550 16 7 2.7801 -2.4795 2.3559 17 7 2.3669 -1.9844 1.2552 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 2.2490 -1.6318 -1.1526 22 1 3.2571 -2.3939 -4.2397 23 1 2.0032 0.9214 2.6903 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307382604.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = 58.028578 kcal Electronic energy + Delta-G solvation = -10489.656571 eV Core-core repulsion = 8465.058343 eV Total energy + Delta-G solvation = -2024.598228 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 199.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.85017 -37.26567 -34.37567 -32.16773 -29.91452 -27.91540 -25.99017 -23.71988 -21.79264 -19.36269 -19.00641 -16.80336 -16.56283 -16.52062 -15.51445 -15.30990 -14.31644 -14.06440 -13.40274 -13.18680 -12.92700 -12.72608 -12.52244 -12.28422 -11.97002 -11.70354 -11.06998 -10.91654 -10.72825 -10.48542 -9.03764 -7.90273 -5.21478 -0.62365 0.31825 0.84977 1.34244 1.48643 1.53083 1.58843 2.57946 3.15628 3.43568 3.82509 4.14255 4.29897 4.44034 4.66182 4.70249 5.03620 5.12363 5.47999 5.52286 6.28253 6.95670 7.35908 8.11468 8.35515 9.33261 Molecular weight = 199.05amu Principal moments of inertia in cm(-1) A = 0.065952 B = 0.008915 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.449307 B = 3140.002156 C = 3353.241790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.243 3.757 3 H 0.084 0.916 4 N -0.737 5.737 5 C -0.243 4.243 6 H 0.088 0.912 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.979 3.021 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.274 1.274 13 C 0.011 3.989 14 C -0.276 4.276 15 S 0.486 5.514 16 N -0.345 5.345 17 N -0.273 5.273 18 H 0.082 0.918 19 H 0.056 0.944 20 H 0.029 0.971 21 H 0.378 0.622 22 H 0.249 0.751 23 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 7.284 15.198 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.131 3.869 3 H 0.102 0.898 4 N -0.378 5.378 5 C -0.374 4.374 6 H 0.105 0.895 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.807 3.193 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.200 1.200 13 C -0.135 4.135 14 C -0.432 4.432 15 S 0.621 5.379 16 N -0.323 5.323 17 N -0.139 5.139 18 H 0.101 0.899 19 H 0.075 0.925 20 H 0.049 0.951 21 H 0.211 0.789 22 H 0.058 0.942 23 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.969 5.714 15.808 16.924 hybrid contribution -0.226 0.786 -2.016 2.175 sum -2.195 6.500 13.793 15.405 Atomic orbital electron populations 1.22286 0.95755 1.00746 1.02174 1.19060 0.93397 0.94147 0.80312 0.89842 1.42680 1.78321 1.10899 1.05906 1.19701 1.35161 0.94619 0.87948 0.89458 1.25694 1.02816 0.96878 1.01926 1.69898 1.52260 1.10636 1.29489 0.85134 0.78138 0.77138 0.78851 1.20100 1.22708 1.19972 1.22932 1.01900 0.89631 0.99045 1.28545 1.08271 1.10310 0.96084 1.80686 1.44075 0.93644 1.19537 1.78603 1.23737 1.28544 1.01449 1.71150 1.12915 1.13375 1.16418 0.89879 0.92511 0.95131 0.78935 0.94222 0.74420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.47 71.98 0.68 -4.46 14 2 C 0.24 9.62 3.28 44.24 0.15 9.76 14 3 H 0.08 3.00 8.08 -2.39 -0.02 2.98 14 4 N -0.74 -39.14 5.11 -326.49 -1.67 -40.81 14 5 C -0.24 -13.62 9.93 84.04 0.83 -12.79 14 6 H 0.09 4.49 7.83 -2.91 -0.02 4.47 14 7 C -0.08 -4.79 5.50 84.86 0.47 -4.32 14 8 N -0.97 -62.69 13.06 21.65 0.28 -62.41 14 9 Si 0.98 46.78 29.55 68.60 2.03 48.80 14 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 14 11 H -0.30 -14.68 7.11 99.48 0.71 -13.97 14 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 14 13 C 0.01 0.40 5.93 41.91 0.25 0.65 14 14 C -0.28 -6.51 11.36 67.15 0.76 -5.74 14 15 S 0.49 10.93 23.40 -56.49 -1.32 9.60 14 16 N -0.34 -12.42 12.54 37.02 0.46 -11.95 14 17 N -0.27 -11.53 10.74 -51.24 -0.55 -12.08 14 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 14 19 H 0.06 2.03 8.14 -2.39 -0.02 2.01 14 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 14 21 H 0.38 22.64 7.07 -92.71 -0.66 21.99 14 22 H 0.25 15.58 8.31 -92.70 -0.77 14.81 14 23 H 0.24 3.20 8.06 -2.91 -0.02 3.17 14 Total: -1.00 -73.50 224.96 2.94 -70.55 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.57 Total: 15.19 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.14 Total: -16.91 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -1.47 Total: -127.24 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 10.93 SS G_CDS: -1.32 Total: 9.60 kcal Total: -73.50 2.94 -70.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307382604.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.583 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds