Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47460 * 2 1 4 4 C 1.47952 * 111.00210 * 189.99821 * 3 2 1 5 5 C 1.53932 * 86.18355 * 222.41626 * 4 3 2 6 6 N 1.46901 * 113.73395 * 138.07726 * 5 4 3 7 7 C 1.46905 * 110.99870 * 156.90204 * 6 5 4 8 8 H 1.09003 * 109.47224 * 325.00460 * 7 6 5 9 9 C 1.53002 * 109.47102 * 85.00132 * 7 6 5 10 10 C 1.50702 * 109.47206 * 205.00135 * 7 6 5 11 11 H 1.08003 * 119.99769 * 0.02562 * 10 7 6 12 12 C 1.37868 * 119.99983 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00448 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00188 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.46640 * 59.99634 * 14 12 10 16 16 H 1.48494 * 109.47497 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46704 * 300.00313 * 14 12 10 18 18 C 1.48188 * 111.07015 * 90.56431 * 3 2 1 19 19 H 1.08997 * 109.47047 * 59.99870 * 1 2 3 20 20 H 1.09000 * 109.46936 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46659 * 299.99798 * 1 2 3 22 22 H 1.09003 * 109.47190 * 239.99482 * 2 1 3 23 23 H 1.09005 * 109.46797 * 120.00287 * 2 1 3 24 24 H 1.09003 * 113.75716 * 108.09975 * 4 3 2 25 25 H 1.08997 * 113.86287 * 336.74936 * 4 3 2 26 26 H 1.08993 * 113.73650 * 269.25760 * 5 4 3 27 27 H 1.00901 * 111.00067 * 280.85379 * 6 5 4 28 28 H 1.09003 * 109.46813 * 60.00077 * 9 7 6 29 29 H 1.08999 * 109.47105 * 180.02562 * 9 7 6 30 30 H 1.08996 * 109.46950 * 299.99914 * 9 7 6 31 31 H 0.96997 * 120.00331 * 179.97438 * 13 12 10 32 32 H 1.08999 * 113.76008 * 23.24298 * 18 3 2 33 33 H 1.09005 * 113.82593 * 251.81028 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4790 1.4314 -0.2398 5 6 3.5231 2.4996 0.8676 6 7 4.6526 2.3446 1.7940 7 6 4.9722 3.6185 2.4522 8 1 4.8033 4.4398 1.7557 9 6 4.0757 3.7977 3.6790 10 6 6.4166 3.6133 2.8820 11 1 7.0354 2.7502 2.6855 12 6 6.9481 4.7103 3.5261 13 7 6.1948 5.7616 3.7651 14 14 8.7388 4.7043 4.0583 15 1 9.6085 4.5313 2.8671 16 1 9.0615 5.9914 4.7249 17 1 8.9695 3.5848 5.0064 18 6 2.2102 1.8827 1.3827 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.7502 1.8093 -1.2256 25 1 3.9980 0.5086 0.0192 26 1 3.4134 3.5192 0.4983 27 1 4.4661 1.6230 2.4741 28 1 4.2446 2.9764 4.3755 29 1 4.3125 4.7430 4.1672 30 1 3.0310 3.8014 3.3681 31 1 6.5686 6.5332 4.2185 32 1 2.3557 1.0914 2.1182 33 1 1.4695 2.6206 1.6910 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379137346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = 29.987484 kcal Electronic energy + Delta-G solvation = -12858.502100 eV Core-core repulsion = 10727.027148 eV Total energy + Delta-G solvation = -2131.474952 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.63803 -35.36738 -32.79174 -31.39411 -28.09658 -25.90491 -25.20964 -24.95250 -21.44863 -20.20465 -19.46835 -16.34883 -15.59749 -15.55153 -14.83520 -14.49521 -13.63168 -13.23556 -12.81086 -12.50389 -12.32925 -11.98100 -11.82213 -11.41815 -11.15955 -10.91893 -10.78341 -10.67499 -10.51887 -10.21638 -10.11295 -9.78047 -8.95299 -8.61371 -8.34739 -7.27798 -5.97212 -4.00894 3.35329 3.39267 3.42590 4.15819 4.45406 4.90146 5.04952 5.11315 5.28132 5.34087 5.49965 5.56462 5.70149 5.74263 5.88051 5.89633 6.07491 6.15397 6.17943 6.47926 6.56471 6.71386 6.87363 7.10353 7.28912 7.36250 7.74858 7.89072 8.27765 8.51313 8.61123 9.05726 9.64423 11.09631 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.082216 B = 0.007023 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.483699 B = 3986.180375 C = 4147.997628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.017 3.983 3 N -0.484 5.484 4 C 0.007 3.993 5 C 0.072 3.928 6 N -0.673 5.673 7 C 0.211 3.789 8 H 0.035 0.965 9 C -0.168 4.168 10 C -0.497 4.497 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C -0.027 4.027 19 H 0.059 0.941 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.327 0.673 28 H 0.026 0.974 29 H 0.088 0.912 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -8.265 -4.512 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 N -0.207 5.207 4 C -0.123 4.123 5 C -0.040 4.040 6 N -0.301 5.301 7 C 0.103 3.897 8 H 0.053 0.947 9 C -0.227 4.227 10 C -0.536 4.536 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.204 1.204 18 C -0.158 4.158 19 H 0.078 0.922 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.716 -7.675 -5.365 12.134 hybrid contribution 0.607 -0.443 1.538 1.711 sum -7.109 -8.118 -3.828 11.450 Atomic orbital electron populations 1.21657 0.95089 1.00833 1.02322 1.22582 0.96572 0.91313 1.00752 1.68455 1.15303 1.18280 1.18676 1.24129 0.87939 0.99572 1.00622 1.23389 0.87956 0.98632 0.94029 1.60692 1.36049 1.10808 1.22566 1.19255 0.94517 0.85357 0.90526 0.94729 1.22450 0.95582 1.03512 1.01154 1.21130 0.95013 1.01365 1.36120 0.92065 1.24948 0.97917 0.95531 0.96096 1.69873 1.35641 1.05413 1.42794 0.86567 0.85121 0.76967 0.78736 1.20284 1.21459 1.20421 1.24873 1.00307 0.99741 0.90873 0.92169 0.92869 0.92895 0.91384 0.94195 0.89781 0.91274 0.88370 0.85528 0.95495 0.89328 0.97455 0.93008 0.91602 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 10.22 37.16 0.38 -1.17 16 2 C 0.02 0.21 5.52 -3.82 -0.02 0.19 16 3 N -0.48 -7.21 6.16 -238.23 -1.47 -8.68 16 4 C 0.01 0.11 7.75 -2.77 -0.02 0.09 16 5 C 0.07 1.30 4.16 -69.41 -0.29 1.01 16 6 N -0.67 -14.10 6.35 -102.18 -0.65 -14.75 16 7 C 0.21 5.26 2.57 -68.86 -0.18 5.09 16 8 H 0.03 0.95 7.47 -51.93 -0.39 0.56 16 9 C -0.17 -3.99 8.94 37.16 0.33 -3.66 16 10 C -0.50 -13.76 8.84 -34.44 -0.30 -14.06 16 11 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 12 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 13 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.03 -0.43 7.52 -2.63 -0.02 -0.45 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.79 8.08 -51.93 -0.42 0.38 16 23 H 0.04 0.50 7.39 -51.93 -0.38 0.11 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 26 H 0.10 1.90 7.50 -51.93 -0.39 1.51 16 27 H 0.33 6.51 7.95 -39.29 -0.31 6.20 16 28 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 30 H 0.01 0.14 7.98 -51.93 -0.41 -0.27 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.07 1.00 7.17 -51.93 -0.37 0.63 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 268.01 15.07 4.04 4.04 Total: -1.00 -27.90 268.01 -8.17 -36.08 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.49 Total: 3.40 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.22 Total: -11.52 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -1.49 Total: -48.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.90 -8.17 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379137346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.065 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds