Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99725 * 2 1 4 4 C 1.46897 * 111.00209 * 123.95774 * 2 1 3 5 5 C 1.53939 * 113.73254 * 164.85675 * 4 2 1 6 6 N 1.48187 * 86.09884 * 221.95455 * 5 4 2 7 7 C 1.46906 * 111.07134 * 137.51875 * 6 5 4 8 8 C 1.53003 * 109.46857 * 90.56517 * 7 6 5 9 9 C 1.50700 * 109.47148 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99741 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00288 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99730 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47237 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47130 * 120.00691 * 13 11 9 16 16 H 1.48506 * 109.47298 * 240.00464 * 13 11 9 17 17 C 1.47957 * 90.80000 * 24.60288 * 6 5 4 18 18 H 1.08997 * 109.47265 * 59.99802 * 1 2 3 19 19 H 1.08993 * 109.46711 * 299.99435 * 1 2 3 20 20 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.46841 * 59.74779 * 3 2 1 22 22 H 1.09001 * 109.46625 * 179.74455 * 3 2 1 23 23 H 1.08998 * 109.47215 * 299.74366 * 3 2 1 24 24 H 1.08998 * 112.93825 * 296.41819 * 4 2 1 25 25 H 1.08997 * 113.75994 * 336.23454 * 5 4 2 26 26 H 1.09003 * 113.75772 * 107.59890 * 5 4 2 27 27 H 1.08994 * 109.47205 * 210.56594 * 7 6 5 28 28 H 1.09008 * 109.46986 * 330.57065 * 7 6 5 29 29 H 1.09000 * 109.47176 * 300.00450 * 8 7 6 30 30 H 1.09002 * 109.47291 * 60.00344 * 8 7 6 31 31 H 0.96999 * 120.00216 * 179.97438 * 12 11 9 32 32 H 1.09002 * 113.75708 * 221.08827 * 17 6 5 33 33 H 1.08998 * 113.76266 * 89.71988 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4875 -1.1221 1.0072 6 7 3.1107 -2.4564 1.5305 7 6 3.7945 -3.5260 0.7913 8 6 5.1232 -3.8507 1.4769 9 6 5.8250 -4.9476 0.7183 10 1 5.3691 -5.3704 -0.1647 11 6 7.0495 -5.4105 1.1509 12 7 7.6049 -4.8952 2.2260 13 14 7.9191 -6.7706 0.2110 14 1 7.0902 -7.1763 -0.9525 15 1 9.2357 -6.2780 -0.2675 16 1 8.1228 -7.9384 1.1054 17 6 1.7246 -2.2785 1.0445 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3632 0.5137 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.6423 1.8961 0.8877 22 1 3.0850 1.3424 0.0046 23 1 1.6497 1.8934 -0.8923 24 1 1.7308 -0.3313 2.1014 25 1 3.8467 -1.1394 -0.0217 26 1 4.1346 -0.5538 1.6753 27 1 3.1661 -4.4165 0.7765 28 1 3.9837 -3.1977 -0.2308 29 1 5.7516 -2.9602 1.4918 30 1 4.9341 -4.1790 2.4989 31 1 8.4662 -5.2211 2.5306 32 1 0.9657 -2.6323 1.7424 33 1 1.5670 -2.6347 0.0265 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379331887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = 33.905535 kcal Electronic energy + Delta-G solvation = -12668.976090 eV Core-core repulsion = 10537.671038 eV Total energy + Delta-G solvation = -2131.305052 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72915 -36.01372 -33.25304 -30.71677 -27.90031 -27.01937 -25.39028 -24.24035 -22.34149 -20.10694 -19.27710 -16.42161 -15.96758 -15.40105 -15.07027 -14.47740 -14.25694 -13.69407 -13.19355 -12.62823 -12.46466 -12.26510 -11.93175 -11.72694 -11.62748 -11.08342 -10.95163 -10.73203 -10.40474 -10.36101 -9.73373 -9.33104 -9.04092 -8.42577 -8.30997 -8.17686 -5.95398 -3.97936 3.33829 3.40925 3.45244 3.89417 4.44063 4.55768 4.60682 5.10895 5.23907 5.28212 5.40377 5.47422 5.49897 5.63850 5.75245 5.82257 5.85222 5.91510 6.01420 6.11206 6.24309 6.47060 6.88398 6.96740 7.08208 7.14321 7.51433 7.80312 7.93988 8.12565 8.47692 9.09905 9.65621 11.16089 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075937 B = 0.006241 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.637575 B = 4485.372945 C = 4541.910974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.044 3.956 5 C 0.021 3.979 6 N -0.479 5.479 7 C 0.033 3.967 8 C 0.032 3.968 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.011 3.989 18 H 0.065 0.935 19 H 0.023 0.977 20 H 0.068 0.932 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.015 0.985 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.079 0.921 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 9.919 -3.610 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.124 4.124 4 C -0.065 4.065 5 C -0.108 4.108 6 N -0.202 5.202 7 C -0.095 4.095 8 C -0.005 4.005 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.118 4.118 18 H 0.084 0.916 19 H 0.042 0.958 20 H 0.087 0.913 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.686 9.486 -3.249 15.398 hybrid contribution 0.213 -0.244 -0.594 0.677 sum -11.474 9.241 -3.843 15.226 Atomic orbital electron populations 1.22328 0.87628 1.02136 1.00217 1.62284 1.07754 1.13859 1.42520 1.22337 1.01129 0.88674 1.00213 1.23722 0.96786 0.93929 0.92034 1.23979 0.94413 0.92439 1.00009 1.68586 1.01740 1.02452 1.47421 1.22825 0.98534 0.92905 0.95267 1.18977 0.89194 0.96217 0.96159 1.21260 1.03796 1.19517 1.11420 0.92769 1.25003 0.97389 0.96870 0.95106 1.69994 1.17321 1.42508 1.23482 0.86542 0.79543 0.82004 0.79936 1.19775 1.21037 1.20998 1.23919 0.94516 0.93514 0.99901 0.91623 0.95845 0.91291 0.95803 0.91096 0.91604 0.91229 0.90579 0.90000 0.92327 0.94978 0.96680 0.95881 0.93092 0.90240 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.51 60.07 0.57 0.83 16 2 N -0.54 -6.79 4.96 -244.60 -1.21 -8.01 16 3 C 0.02 0.27 9.53 60.07 0.57 0.84 16 4 C 0.04 0.62 3.33 -69.41 -0.23 0.39 16 5 C 0.02 0.35 7.07 -2.63 -0.02 0.33 16 6 N -0.48 -9.24 6.16 -238.23 -1.47 -10.71 16 7 C 0.03 0.72 4.74 -3.82 -0.02 0.70 16 8 C 0.03 0.87 5.28 -27.88 -0.15 0.72 16 9 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 17 C 0.01 0.17 6.88 -2.76 -0.02 0.15 16 18 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 19 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 20 H 0.07 0.70 7.47 -51.93 -0.39 0.31 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.07 0.78 7.58 -51.93 -0.39 0.39 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.33 7.49 -51.93 -0.39 0.94 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.03 0.70 7.39 -51.92 -0.38 0.32 16 29 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 271.43 15.07 4.09 4.09 Total: -1.00 -31.09 271.43 -8.31 -39.40 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.73 Total: -5.02 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 0.30 Total: -9.96 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -1.94 Total: -45.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.09 -8.31 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379331887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.304 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds