Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.53001 * 109.46716 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46974 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99839 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00274 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47449 * 89.99463 * 13 11 9 15 15 H 1.48501 * 109.47104 * 210.00117 * 13 11 9 16 16 H 1.48503 * 109.47016 * 330.00001 * 13 11 9 17 17 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 18 18 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 19 19 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 21 21 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 22 22 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 23 23 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 24 24 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 25 25 H 1.08994 * 114.17159 * 272.37520 * 5 4 3 26 26 H 1.00906 * 110.99352 * 347.20565 * 6 5 4 27 27 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 28 28 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 29 29 H 1.08994 * 109.47380 * 300.00095 * 8 7 6 30 30 H 1.09003 * 109.47174 * 60.00362 * 8 7 6 31 31 H 0.96997 * 119.99854 * 180.02562 * 12 11 9 32 32 H 1.09005 * 113.47586 * 253.47470 * 17 3 2 33 33 H 1.08996 * 113.47223 * 23.93957 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2981 3.5301 -3.2225 9 6 6.6691 4.8650 -3.8153 10 1 6.0976 5.7458 -3.5623 11 6 7.7388 4.9620 -4.6798 12 7 8.4350 3.8896 -4.9875 13 14 8.1991 6.6168 -5.4141 14 1 9.1743 7.2987 -4.5256 15 1 8.8081 6.4121 -6.7529 16 1 6.9807 7.4553 -5.5475 17 6 3.4743 1.4313 0.2391 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 2.4846 1.0415 -2.0760 24 1 1.5462 2.5598 -1.7434 25 1 3.4085 3.5330 -0.4633 26 1 4.5549 1.7152 -2.4511 27 1 4.2457 4.0872 -2.8804 28 1 5.3305 4.3963 -1.5035 29 1 7.1383 3.1416 -2.6470 30 1 6.0530 2.8327 -4.0236 31 1 9.1877 3.9579 -5.5954 32 1 3.7395 1.7842 1.2357 33 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382208006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = 1.988992 kcal Electronic energy + Delta-G solvation = -12369.204721 eV Core-core repulsion = 10236.515664 eV Total energy + Delta-G solvation = -2132.689057 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18013 -36.87430 -34.91233 -33.20046 -30.77559 -27.37618 -26.85827 -25.57048 -22.66971 -22.32966 -20.82230 -18.52656 -17.14549 -16.82843 -16.47466 -16.26473 -15.57316 -14.98128 -14.54663 -14.23174 -13.84987 -13.56539 -13.37097 -13.06636 -12.85026 -12.69189 -12.55995 -12.23745 -11.92321 -11.67907 -11.59588 -11.35362 -11.14822 -10.56076 -9.96795 -9.24962 -8.20009 -6.31480 1.41495 1.42985 1.53953 2.41148 2.92681 3.13714 3.37811 3.60029 3.92185 4.03392 4.20446 4.33330 4.47012 4.54196 4.60569 4.63555 4.67953 4.82441 4.91179 4.93432 5.01777 5.06864 5.27494 5.40818 5.45619 5.67897 5.79108 6.07270 6.14067 6.26262 6.50243 6.85870 7.38015 8.92196 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.098726 B = 0.005275 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.544243 B = 5306.776209 C = 5364.175396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 N -0.479 5.479 4 C -0.023 4.023 5 C 0.058 3.942 6 N -0.682 5.682 7 C 0.085 3.915 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.061 0.939 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.011 3.989 18 H 0.047 0.953 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.341 0.659 27 H 0.022 0.978 28 H 0.059 0.941 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -5.767 8.136 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 N -0.202 5.202 4 C -0.154 4.154 5 C -0.053 4.053 6 N -0.313 5.313 7 C -0.044 4.044 8 C -0.008 4.008 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.119 4.119 18 H 0.066 0.934 19 H 0.091 0.909 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.160 0.840 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.013 0.987 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.034 -5.455 8.996 16.750 hybrid contribution 0.361 0.145 -1.682 1.726 sum -12.673 -5.309 7.314 15.566 Atomic orbital electron populations 1.21632 0.93774 1.02140 1.01980 1.22727 0.97712 0.89662 1.01631 1.68847 1.14417 1.20600 1.16376 1.24635 0.98386 1.00069 0.92298 1.23203 0.87759 0.99418 0.94970 1.60419 1.36982 1.09702 1.24153 1.21814 0.96467 0.89781 0.96342 1.18944 0.93053 0.95570 0.93201 1.21625 1.14173 0.95373 1.27191 0.92086 1.25970 0.96136 1.00666 0.96919 1.70105 1.20254 1.30659 1.36219 0.85421 0.78699 0.79146 0.77609 1.19780 1.20709 1.18678 1.23958 0.88895 0.98764 1.00287 0.93368 0.90898 0.92339 0.93606 0.90314 0.90709 0.89902 0.88069 0.84005 0.95972 0.92265 0.98726 0.98949 0.92736 0.89311 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.01 0.22 5.54 86.30 0.48 0.70 16 3 N -0.48 -11.29 6.33 -927.82 -5.88 -17.17 16 4 C -0.02 -0.57 7.33 83.58 0.61 0.04 16 5 C 0.06 1.64 4.53 45.37 0.21 1.84 16 6 N -0.68 -23.84 6.65 -490.66 -3.26 -27.11 16 7 C 0.08 3.55 5.47 86.30 0.47 4.02 16 8 C 0.03 1.59 5.23 29.85 0.16 1.75 16 9 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 10 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.06 5.46 84.65 0.46 0.52 16 12 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 13 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 17 C 0.01 0.26 7.49 83.58 0.63 0.89 16 18 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.05 0.88 7.30 -2.39 -0.02 0.86 16 22 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 23 H 0.07 1.76 7.12 -2.38 -0.02 1.74 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.10 2.95 7.88 -2.39 -0.02 2.93 16 26 H 0.34 11.49 8.20 -89.69 -0.74 10.76 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.07 1.80 7.91 -2.39 -0.02 1.78 16 Total: -1.00 -62.56 273.34 -2.52 -65.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.33 Total: 12.50 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 3.98 Total: -22.81 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -8.86 Total: -101.08 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -62.56 -2.52 -65.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382208006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.069 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds