Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47439 * 111.00168 * 2 1 4 4 C 1.54326 * 107.23368 * 123.25539 * 3 2 1 5 5 C 1.55265 * 103.08361 * 22.20763 * 4 3 2 6 6 C 1.47850 * 110.99934 * 120.84652 * 2 1 3 7 7 H 1.09000 * 110.37091 * 332.57459 * 6 2 1 8 8 C 1.52997 * 110.37276 * 94.80585 * 6 2 1 9 9 C 1.52996 * 109.47147 * 294.77727 * 8 6 2 10 10 N 1.46501 * 109.47313 * 185.69155 * 9 8 6 11 11 C 1.36935 * 120.00369 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.38812 * 120.00306 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00136 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99656 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47008 * 269.99746 * 15 13 11 17 17 H 1.48496 * 109.47236 * 30.00100 * 15 13 11 18 18 H 1.48499 * 109.46893 * 150.00222 * 15 13 11 19 19 H 1.09001 * 109.47018 * 305.34644 * 1 2 3 20 20 H 1.08996 * 109.46886 * 65.34498 * 1 2 3 21 21 H 1.09001 * 109.47450 * 185.34641 * 1 2 3 22 22 H 1.08993 * 109.89344 * 242.66348 * 3 2 1 23 23 H 1.09007 * 109.89003 * 3.69350 * 3 2 1 24 24 H 1.08998 * 110.70616 * 140.66648 * 4 3 2 25 25 H 1.08998 * 110.70976 * 263.73217 * 4 3 2 26 26 H 1.08992 * 111.08817 * 206.38448 * 5 4 3 27 27 H 1.09003 * 110.94415 * 82.52397 * 5 4 3 28 28 H 1.08998 * 109.46803 * 174.77571 * 8 6 2 29 29 H 1.08998 * 109.47288 * 54.77819 * 8 6 2 30 30 H 1.08995 * 109.47608 * 65.68867 * 9 8 6 31 31 H 1.09007 * 109.47114 * 305.68614 * 9 8 6 32 32 H 0.97003 * 119.99553 * 359.97438 * 10 9 8 33 33 H 0.96995 * 119.99831 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9159 1.5136 1.2326 5 6 3.3044 0.0435 1.5467 6 6 1.9988 -0.7077 1.1851 7 1 1.2881 -0.6519 2.0095 8 6 2.3019 -2.1677 0.8422 9 6 0.9979 -2.8938 0.5060 10 7 1.2696 -4.3201 0.3105 11 6 0.2467 -5.1756 -0.0008 12 1 -0.7605 -4.7990 -0.1018 13 6 0.5042 -6.5270 -0.1864 14 7 -0.4790 -7.3492 -0.4861 15 14 2.2460 -7.1785 -0.0109 16 1 2.9309 -7.1214 -1.3274 17 1 2.9889 -6.3473 0.9701 18 1 2.2029 -8.5849 0.4639 19 1 -0.3633 0.5945 0.8382 20 1 -0.3633 0.4287 -0.9340 21 1 -0.3634 -1.0232 0.0958 22 1 2.5697 1.5540 -0.9104 23 1 1.1754 2.0893 0.0660 24 1 3.8001 2.1033 0.9906 25 1 2.3753 1.9573 2.0686 26 1 3.5470 -0.0810 2.6020 27 1 4.1309 -0.2843 0.9162 28 1 2.7768 -2.6504 1.6963 29 1 2.9719 -2.2077 -0.0166 30 1 0.5744 -2.4762 -0.4074 31 1 0.2901 -2.7678 1.3254 32 1 2.1741 -4.6585 0.4017 33 1 -0.2991 -8.2935 -0.6155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693962053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = -10.901258 kcal Electronic energy + Delta-G solvation = -12857.032511 eV Core-core repulsion = 10723.784491 eV Total energy + Delta-G solvation = -2133.248021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19390 -36.96240 -34.10682 -32.97829 -32.10678 -28.30038 -26.62000 -24.98139 -22.95295 -21.84816 -21.00159 -19.58066 -17.37853 -16.76891 -16.17802 -15.70536 -15.51545 -14.96343 -14.73095 -14.17411 -13.93102 -13.62879 -13.46602 -13.06097 -12.91180 -12.53012 -12.18876 -12.03752 -11.96985 -11.86397 -11.79153 -11.51492 -11.35020 -10.95362 -9.30025 -9.22102 -8.03894 -5.37586 1.37281 1.41789 1.49207 2.48343 3.06680 3.27277 3.52694 3.76771 3.88281 4.11097 4.24128 4.41058 4.46807 4.53002 4.54539 4.60781 4.76022 4.79773 4.97469 5.00901 5.03016 5.07313 5.17643 5.33223 5.36153 5.41495 5.73689 6.12746 6.19636 6.20601 7.06921 7.83487 8.03957 9.17883 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060214 B = 0.007603 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.898114 B = 3681.857364 C = 4021.765103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.547 5.547 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.121 4.121 6 C 0.076 3.924 7 H 0.052 0.948 8 C -0.103 4.103 9 C 0.158 3.842 10 N -0.761 5.761 11 C -0.239 4.239 12 H 0.052 0.948 13 C -0.066 4.066 14 N -0.985 5.985 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.250 1.250 18 H -0.292 1.292 19 H 0.034 0.966 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.012 0.988 32 H 0.366 0.634 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 19.050 4.601 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.272 5.272 3 C -0.089 4.089 4 C -0.172 4.172 5 C -0.159 4.159 6 C -0.033 4.033 7 H 0.070 0.930 8 C -0.141 4.141 9 C 0.032 3.968 10 N -0.407 5.407 11 C -0.370 4.370 12 H 0.071 0.929 13 C -0.257 4.257 14 N -0.635 5.635 15 Si 0.787 3.213 16 H -0.203 1.203 17 H -0.175 1.175 18 H -0.219 1.219 19 H 0.053 0.947 20 H 0.090 0.910 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.199 0.801 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.162 18.770 4.102 21.286 hybrid contribution -0.022 -0.564 0.530 0.774 sum 9.140 18.207 4.632 20.892 Atomic orbital electron populations 1.22653 0.87703 1.01810 1.01109 1.63395 1.08137 1.15001 1.40692 1.22902 0.98378 0.88449 0.99180 1.22770 1.00255 0.96628 0.97581 1.22761 0.96178 0.94668 1.02311 1.22534 0.96789 0.93101 0.90854 0.92969 1.21630 0.96698 0.94288 1.01525 1.20864 0.96532 0.82109 0.97270 1.42800 1.06543 1.05022 1.86321 1.19062 0.89758 0.89709 1.38495 0.92948 1.25577 1.01959 0.96142 1.02066 1.69895 1.33055 1.03871 1.56722 0.85330 0.79988 0.77346 0.78660 1.20329 1.17489 1.21884 0.94717 0.90957 0.92382 0.90562 0.92067 0.89124 0.90921 0.89508 0.90563 0.91098 0.91602 0.95491 0.96954 0.80114 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.77 127.69 1.12 1.52 16 2 N -0.55 -14.25 4.94 -886.63 -4.38 -18.63 16 3 C 0.04 0.75 6.89 86.65 0.60 1.35 16 4 C -0.13 -2.13 6.94 31.82 0.22 -1.91 16 5 C -0.12 -2.31 6.51 32.02 0.21 -2.11 16 6 C 0.08 1.94 2.58 45.38 0.12 2.06 16 7 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 8 C -0.10 -3.24 5.06 30.59 0.15 -3.08 16 9 C 0.16 6.49 4.91 86.38 0.42 6.91 16 10 N -0.76 -38.05 5.41 -343.45 -1.86 -39.90 16 11 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 12 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 13 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 14 N -0.98 -65.01 13.97 21.65 0.30 -64.70 16 15 Si 0.96 46.83 27.73 68.60 1.90 48.73 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H 0.03 0.78 8.09 -2.39 -0.02 0.77 16 20 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.79 5.28 -2.39 -0.01 1.77 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.08 7.56 -2.38 -0.02 1.06 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.17 6.41 -2.39 -0.02 1.16 16 31 H 0.01 0.52 8.06 -2.38 -0.02 0.51 16 32 H 0.37 17.22 5.53 -92.71 -0.51 16.71 16 33 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -69.44 260.58 0.66 -68.78 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.50 Total: 18.12 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.19 Total: -12.40 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -5.93 Total: -123.24 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -69.44 0.66 -68.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693962053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.883 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds