Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47969 * 110.99933 * 2 1 4 4 C 1.53933 * 86.18053 * 222.41346 * 3 2 1 5 5 C 1.47957 * 111.00170 * 260.64446 * 2 1 3 6 6 H 1.08998 * 113.86136 * 23.25136 * 5 2 1 7 7 C 1.53007 * 113.75706 * 251.89672 * 5 2 1 8 8 N 1.46898 * 109.46764 * 78.43862 * 7 5 2 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46953 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46755 * 89.99832 * 15 13 11 17 17 H 1.48495 * 109.46931 * 209.99846 * 15 13 11 18 18 H 1.48500 * 109.46738 * 330.00088 * 15 13 11 19 19 H 1.09003 * 109.47289 * 159.35637 * 1 2 3 20 20 H 1.08994 * 109.47521 * 279.35985 * 1 2 3 21 21 H 1.09004 * 109.47277 * 39.36215 * 1 2 3 22 22 H 1.09005 * 113.75499 * 108.09695 * 3 2 1 23 23 H 1.09001 * 113.85620 * 336.74933 * 3 2 1 24 24 H 1.08999 * 113.73938 * 269.36131 * 4 3 2 25 25 H 1.09003 * 113.82251 * 138.08974 * 4 3 2 26 26 H 1.08995 * 109.47210 * 318.43814 * 7 5 2 27 27 H 1.08997 * 109.46954 * 198.43799 * 7 5 2 28 28 H 1.00902 * 111.00533 * 56.04323 * 8 7 5 29 29 H 1.09000 * 109.47033 * 300.00113 * 9 8 7 30 30 H 1.09001 * 109.46544 * 60.00058 * 9 8 7 31 31 H 1.09000 * 109.47486 * 299.99976 * 10 9 8 32 32 H 1.09001 * 109.47362 * 60.00699 * 10 9 8 33 33 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0359 5 6 1.9992 -0.2245 -1.3629 6 1 1.3022 0.0435 -2.1569 7 6 2.6264 -1.6061 -1.5604 8 7 1.5644 -2.6036 -1.7476 9 6 2.1306 -3.9453 -1.9413 10 6 0.9966 -4.9547 -2.1318 11 6 1.5774 -6.3311 -2.3299 12 1 2.6482 -6.4719 -2.3204 13 6 0.7419 -7.4107 -2.5232 14 7 -0.5620 -7.2394 -2.5342 15 14 1.4618 -9.1167 -2.7694 16 1 1.6124 -9.7852 -1.4520 17 1 0.5543 -9.9174 -3.6300 18 1 2.7909 -9.0036 -3.4220 19 1 -0.3634 -0.9617 -0.3623 20 1 -0.3634 0.1671 1.0139 21 1 -0.3634 0.7946 -0.6518 22 1 2.4459 1.6803 0.9483 23 1 1.3021 2.1212 -0.3935 24 1 3.9451 0.5052 -0.5951 25 1 3.1934 1.5749 -1.8573 26 1 3.2179 -1.8655 -0.6825 27 1 3.2696 -1.5907 -2.4403 28 1 0.9624 -2.3510 -2.5170 29 1 2.7701 -3.9458 -2.8240 30 1 2.7189 -4.2211 -1.0662 31 1 0.3575 -4.9540 -1.2488 32 1 0.4080 -4.6790 -3.0067 33 1 -1.1499 -7.9988 -2.6698 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712542929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = -0.315531 kcal Electronic energy + Delta-G solvation = -12462.309578 eV Core-core repulsion = 10329.520589 eV Total energy + Delta-G solvation = -2132.788989 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81717 -37.27327 -34.98715 -32.07631 -31.18103 -28.43422 -25.81546 -24.95842 -23.37418 -22.49856 -20.40820 -18.51663 -17.05441 -16.87323 -16.43503 -16.19978 -15.52564 -15.17123 -14.53193 -14.13830 -14.07370 -13.93694 -13.21915 -12.85171 -12.64067 -12.48024 -12.35096 -12.23891 -12.00532 -11.73540 -11.59754 -11.37923 -11.10666 -10.57037 -9.65273 -9.22594 -8.20768 -6.32669 1.40219 1.42374 1.53303 2.40561 2.98320 3.12575 3.35233 3.68230 3.97851 4.27265 4.29853 4.36544 4.48493 4.54512 4.59354 4.61252 4.71645 4.82504 4.92792 4.98195 5.06345 5.08776 5.30642 5.43373 5.56944 5.66344 5.77868 6.12992 6.21678 6.29528 6.56605 6.84570 7.36775 8.91588 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.078250 B = 0.005758 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.740265 B = 4861.689821 C = 5098.019255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.498 5.498 3 C 0.000 4.000 4 C -0.130 4.130 5 C 0.033 3.967 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.694 5.694 9 C 0.086 3.914 10 C 0.033 3.967 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.262 1.262 19 H 0.055 0.945 20 H 0.068 0.932 21 H 0.042 0.958 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.335 0.665 29 H 0.020 0.980 30 H 0.053 0.947 31 H -0.009 1.009 32 H -0.009 1.009 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 16.414 1.680 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.220 5.220 3 C -0.128 4.128 4 C -0.168 4.168 5 C -0.077 4.077 6 H 0.097 0.903 7 C -0.050 4.050 8 N -0.325 5.325 9 C -0.043 4.043 10 C -0.005 4.005 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.186 1.186 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.152 0.848 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.770 15.786 2.879 17.052 hybrid contribution -0.240 -0.527 -1.564 1.668 sum 5.530 15.259 1.315 16.283 Atomic orbital electron populations 1.22763 0.89576 1.01198 1.01759 1.68465 1.09590 1.19187 1.24808 1.23970 0.97430 0.90768 1.00656 1.23333 0.97689 0.96508 0.99248 1.23489 0.97577 0.94859 0.91789 0.90254 1.21863 0.92814 0.90302 1.00029 1.60459 1.21306 1.01928 1.48793 1.21750 0.96461 0.88028 0.98080 1.18911 0.93761 0.93076 0.94721 1.21625 0.93465 0.93849 1.49515 0.92157 1.25998 0.95134 1.03877 0.94745 1.70111 1.03915 1.32433 1.50818 0.85391 0.78495 0.78437 0.78369 1.19773 1.20567 1.18626 0.92618 0.91344 0.93909 0.88866 0.90207 0.89032 0.89034 0.91615 0.94197 0.84814 0.96226 0.92848 0.99058 0.99023 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.10 9.65 127.69 1.23 1.13 16 2 N -0.50 -12.88 6.36 -909.87 -5.79 -18.67 16 3 C 0.00 0.00 7.96 86.40 0.69 0.69 16 4 C -0.13 -2.30 7.85 31.24 0.25 -2.06 16 5 C 0.03 0.79 3.50 45.02 0.16 0.94 16 6 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 7 C 0.08 2.35 5.72 86.31 0.49 2.84 16 8 N -0.69 -25.89 6.50 -513.88 -3.34 -29.24 16 9 C 0.09 3.79 5.62 86.30 0.49 4.27 16 10 C 0.03 1.82 5.23 29.85 0.16 1.97 16 11 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 15 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.04 0.90 7.62 -2.38 -0.02 0.88 16 22 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.08 1.23 7.62 -2.39 -0.02 1.21 16 24 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.33 11.99 8.73 -89.69 -0.78 11.21 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -66.25 274.59 -2.39 -68.64 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.28 Total: 11.63 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.15 Total: -21.57 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -8.84 Total: -105.72 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.25 -2.39 -68.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712542929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.321 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds