Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.47370 * 2 1 4 4 C 1.46897 * 110.99789 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46831 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.78170 * 308.23829 * 5 4 3 7 7 C 1.55158 * 110.72145 * 184.99706 * 5 4 3 8 8 C 1.54909 * 101.61642 * 206.15534 * 7 5 4 9 9 N 1.47423 * 104.83351 * 36.99324 * 8 7 5 10 10 C 1.36936 * 125.64594 * 155.90840 * 9 8 7 11 11 H 1.08007 * 120.00033 * 179.97438 * 10 9 8 12 12 C 1.38813 * 120.00281 * 359.97114 * 10 9 8 13 13 N 1.31616 * 120.00050 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99983 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.47129 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47513 * 119.99988 * 14 12 10 17 17 H 1.48502 * 109.47290 * 240.00176 * 14 12 10 18 18 C 1.47016 * 108.70440 * 335.86643 * 9 8 7 19 19 H 1.09008 * 109.46914 * 59.99554 * 1 2 3 20 20 H 1.08988 * 109.47324 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46589 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.47048 * 240.00099 * 2 1 3 23 23 H 1.08994 * 109.47004 * 120.00356 * 2 1 3 24 24 H 1.00896 * 110.99731 * 303.95583 * 3 2 1 25 25 H 1.08996 * 109.47654 * 60.00165 * 4 3 2 26 26 H 1.09005 * 109.46979 * 299.99614 * 4 3 2 27 27 H 1.09002 * 111.00366 * 88.06052 * 7 5 4 28 28 H 1.09002 * 111.00429 * 324.25114 * 7 5 4 29 29 H 1.09000 * 110.36449 * 155.82966 * 8 7 5 30 30 H 1.09002 * 110.36579 * 278.03887 * 8 7 5 31 31 H 0.96996 * 120.00056 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.88531 * 120.47268 * 18 9 8 33 33 H 1.08996 * 109.88671 * 241.49081 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9596 2.8796 0.0001 6 1 3.4784 3.4424 -0.7998 7 6 5.5041 2.9566 -0.1270 8 6 5.8060 4.3135 0.5566 9 7 4.8505 4.3929 1.6764 10 6 5.0139 5.1380 2.8136 11 1 4.2520 5.1292 3.5792 12 6 6.1588 5.9045 2.9827 13 7 7.0870 5.9156 2.0497 14 14 6.3820 6.9202 4.5344 15 1 5.2040 6.7367 5.4200 16 1 7.6090 6.4772 5.2439 17 1 6.5100 8.3549 4.1729 18 6 3.6926 3.5406 1.3694 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0275 -0.0005 21 1 -0.3632 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.6443 1.9012 -0.7813 25 1 3.8648 0.9203 -0.8908 26 1 3.8655 0.9200 0.8892 27 1 5.8099 2.9695 -1.1731 28 1 5.9815 2.1351 0.4073 29 1 6.8300 4.3307 0.9298 30 1 5.6438 5.1345 -0.1418 31 1 7.8872 6.4510 2.1680 32 1 3.5837 2.7731 2.1357 33 1 2.7882 4.1470 1.3212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719052220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = -5.229937 kcal Electronic energy + Delta-G solvation = -12832.290229 eV Core-core repulsion = 10699.288135 eV Total energy + Delta-G solvation = -2133.002094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49792 -37.15332 -34.65215 -32.25412 -30.77612 -28.91576 -26.88692 -24.39827 -22.95991 -21.94619 -20.89953 -18.85666 -17.00924 -16.74495 -16.41512 -15.77704 -15.57617 -14.78074 -14.23135 -14.16978 -13.56664 -13.45667 -12.97034 -12.88651 -12.74156 -12.67040 -12.36834 -12.07146 -11.96272 -11.77478 -11.57432 -11.41096 -11.23304 -10.74117 -9.28666 -8.85703 -7.76637 -5.20619 1.46152 1.47628 1.58324 2.50705 3.24149 3.33541 3.76010 3.91670 4.11482 4.15983 4.31142 4.40294 4.63202 4.65930 4.68067 4.72543 4.87370 4.97536 5.01464 5.14999 5.16730 5.22646 5.37014 5.45026 5.52238 5.67323 5.83179 6.14270 6.32894 6.54494 7.12897 7.81107 8.45651 9.25784 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061155 B = 0.007412 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.742986 B = 3776.862237 C = 4131.488494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.703 5.703 4 C 0.085 3.915 5 C -0.083 4.083 6 H 0.077 0.923 7 C -0.124 4.124 8 C 0.151 3.849 9 N -0.631 5.631 10 C -0.239 4.239 11 H 0.077 0.923 12 C -0.069 4.069 13 N -0.951 5.951 14 Si 0.982 3.018 15 H -0.268 1.268 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.151 3.849 19 H 0.058 0.942 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.064 0.936 24 H 0.345 0.655 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.071 0.929 30 H -0.015 1.015 31 H 0.247 0.753 32 H 0.019 0.981 33 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.790 -10.878 -6.105 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.335 5.335 4 C -0.044 4.044 5 C -0.102 4.102 6 H 0.096 0.904 7 C -0.163 4.163 8 C 0.026 3.974 9 N -0.358 5.358 10 C -0.369 4.369 11 H 0.095 0.905 12 C -0.261 4.261 13 N -0.601 5.601 14 Si 0.810 3.190 15 H -0.193 1.193 16 H -0.215 1.215 17 H -0.218 1.218 18 C 0.026 3.974 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.163 0.837 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.003 0.997 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -8.739 -10.697 -5.316 14.801 hybrid contribution 0.523 0.651 -0.078 0.839 sum -8.216 -10.046 -5.394 14.055 Atomic orbital electron populations 1.21733 0.93998 1.02401 1.02157 1.21955 0.96464 0.88700 1.00470 1.60436 1.07778 1.14572 1.50712 1.21777 0.87692 0.94412 1.00558 1.22070 0.95668 0.96006 0.96445 0.90433 1.22873 0.95053 0.97778 1.00613 1.21724 0.96055 0.92209 0.87396 1.44934 1.19567 1.52712 1.18543 1.19518 1.02809 1.19151 0.95376 0.90535 1.25653 0.96810 1.01984 1.01696 1.70071 1.10154 1.45011 1.34870 0.84955 0.77646 0.77713 0.78693 1.19255 1.21542 1.21769 1.21321 0.88942 0.91967 0.95181 0.92300 0.90812 0.92931 0.94552 0.91790 0.83660 0.93474 0.92011 0.89646 0.91850 0.91095 0.99724 0.94335 0.96333 0.96976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.17 71.98 0.73 -1.71 16 2 C 0.05 1.06 6.40 86.30 0.55 1.62 16 3 N -0.70 -17.55 6.42 -513.88 -3.30 -20.85 16 4 C 0.08 2.34 5.03 86.30 0.43 2.78 16 5 C -0.08 -2.87 3.11 -9.58 -0.03 -2.90 16 6 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 7 C -0.12 -4.71 6.53 31.99 0.21 -4.50 16 8 C 0.15 7.81 5.89 86.86 0.51 8.32 16 9 N -0.63 -34.69 3.39 -691.88 -2.35 -37.03 16 10 C -0.24 -14.20 10.27 84.03 0.86 -13.34 16 11 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 12 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 13 N -0.95 -58.57 10.09 21.65 0.22 -58.35 16 14 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 18 C 0.15 6.74 6.76 86.75 0.59 7.33 16 19 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 20 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.34 7.73 8.73 -89.70 -0.78 6.95 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.85 7.93 -2.38 -0.02 1.84 16 27 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 29 H 0.07 4.15 5.88 -2.39 -0.01 4.13 16 30 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.02 0.85 7.68 -2.39 -0.02 0.83 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -66.71 266.26 1.20 -65.51 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.28 Total: 7.53 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.32 Total: -6.02 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -5.43 Total: -116.23 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -66.71 1.20 -65.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719052220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.281 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds